PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00040.220
Common NameAMTR_s00040p00209530, LOC18441415
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family HSF
Protein Properties Length: 484aa    MW: 54122.4 Da    PI: 4.8221
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00040.220genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.36.6e-35551472103
                                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSB CS
                              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeek 70 
                                               Fl+k+y++++d+ l+ ++sws++g+sfvv+d+ efa++vLp++Fkh+nf+SFvRQLn+YgF+k++ ++ 
  evm_27.model.AmTr_v1.0_scaffold00040.220  55 FLTKTYDLVDDPLLDPVVSWSRSGESFVVWDPMEFARTVLPRHFKHNNFSSFVRQLNTYGFRKIDADR- 122
                                               9****************************************************************999. PP

                                               TTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                              HSF_DNA-bind  71 kskskekiweFkhksFkkgkkellekikrkkse 103
                                                       weF+++ F +g+++ll++i+r++s+
  evm_27.model.AmTr_v1.0_scaffold00040.220 123 --------WEFANEGFLRGQRHLLKNIHRRRSQ 147
                                               ........**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.43E-3551144IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-6051144IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.5E-3852144IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-185578IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3155144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-1893105IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434094118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-18106118IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MASNPGPSSS ASSSHLLEQP VLSSEPLDSG GDFQEGVPAI PQPLESLQGV PIPPFLTKTY  60
DLVDDPLLDP VVSWSRSGES FVVWDPMEFA RTVLPRHFKH NNFSSFVRQL NTYGFRKIDA  120
DRWEFANEGF LRGQRHLLKN IHRRRSQQMQ QIGHPLGSCV EVGKFGLENE IERLRRDKNV  180
LMQEVVKLQQ QHQMTNHRLE TMNQRIQVAE QRQKQMVSFL AKSLQNPAFL AQIFQLRENQ  240
QVDSRGRKRR FIKHQQAGPS SSASSEETQL VKYKAESGDS PSPLASQGLL AELANDILGD  300
LDGQEEFDLG EAKTWDIAHV GGKDDESIAL GRKPEPEPVP VFNPGLPFHD PSDMLLMGKN  360
VMTSPTDESS TGAKYFVSFP DHLSPKIFSE LMSPADFLMK QEDLPDVGFS GSDPTSTVPV  420
WEDLFYYEGQ ELDDAAGVSN FWNVGSQQRV EGSGTNQLNE SSLDDLSKQM KQLTKDHNED  480
TNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-265214417120Heat shock factor protein 1
5d5u_B3e-265214426129Heat shock factor protein 1
5d5v_B3e-265214426129Heat shock factor protein 1
5d5v_D3e-265214426129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006851710.10.0heat stress transcription factor A-2e
TrEMBLW1PT520.0W1PT52_AMBTC; Uncharacterized protein
STRINGERN131770.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.12e-82heat shock transcription factor A1D
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]