PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00040.196
Common NameAMTR_s00040p00196580, LOC18441391
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 201aa    MW: 21109.3 Da    PI: 4.364
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00040.196genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-181867255
                                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                               y+GVr++k  g+Wv+eIr+p++   ++r++lg++ t+e+Aa a++ a+++l+g
  evm_27.model.AmTr_v1.0_scaffold00040.196 18 IYRGVRQRK-GGKWVSEIREPRK---STRIWLGTYATPEMAAVAYDVAALALKG 67
                                              69******9.9*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.52E-301778No hitNo description
PfamPF008471.2E-121767IPR001471AP2/ERF domain
PROSITE profilePS5103222.511876IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-201878IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-281878IPR001471AP2/ERF domain
SMARTSM003804.1E-311882IPR001471AP2/ERF domain
PRINTSPR003673.5E-81930IPR001471AP2/ERF domain
PRINTSPR003673.5E-84157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MPESTGGSGG AKSGRHPIYR GVRQRKGGKW VSEIREPRKS TRIWLGTYAT PEMAAVAYDV  60
AALALKGRHG ATLNFPDSIA DLPSPSTNSS SDIRAAAASA AEALSGSRNP GFALKGTDST  120
MTAQTTSGDP NITGDSSDFP VFGESGDSDM TEFMDEELIF DMPNLLVSMA EGLMLSPPRL  180
GEEEGCGGGD DNLWNYKEEP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-131379266ATERF1
3gcc_A2e-131379266ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020527377.11e-145ethylene-responsive transcription factor ERF024
SwissprotQ9SJR01e-49ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLW1PY091e-144W1PY09_AMBTC; Uncharacterized protein
STRINGERN131531e-144(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.11e-36ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]