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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm_27.model.AmTr_v1.0_scaffold00039.13 |
| Common Name | AMTR_s00039p00040000, LOC18444019 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
NF-YC |
| Protein Properties |
Length: 274aa MW: 29911.9 Da PI: 6.5117 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00039.13 | genome | TAGP | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 179.6 | 2.8e-56 | 82 | 186 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhae 67
ql+ fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+e
evm_27.model.AmTr_v1.0_scaffold00039.13 82 QLQLFWANQlqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTE 151
89******99999********************************************************* PP
NF-YC 68 enkrrtlkksdiaaavtrtdifdflvdivprdelk 102
enkrrtl+k+diaaa+trtdifdflvdivprdelk
evm_27.model.AmTr_v1.0_scaffold00039.13 152 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDELK 186
********************************975 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 274 aa
Download sequence Send
to blast |
MDHQQGQGQQ PPPVMGMVTG APPPMPYPSY QTSQVVGATS AGPGSPLGQV GPAQFGTSAP 60
HLQHPLAYQH LQHQQQAQQA HQLQLFWANQ LQEIEQTTDF KNHSLPLARI KKIMKADEDV 120
RMISAEAPVV FAKACEMFIL ELTLRSWIHT EENKRRTLQK NDIAAAITRT DIFDFLVDIV 180
PRDELKDEVI AAGLPRPAGP GLAVGGPPTD AMPYYYMPAQ APPPNVATMV GRPVGEQGLY 240
GQQPRPFVGQ QVWPTQPNQQ QQQVPEQGRG NSG*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
| Publications
? help Back to Top |
- Amborella Genome Project
The Amborella genome and the evolution of flowering plants.
Science, 2013. 342(6165): p. 1241089
[PMID:24357323] - Hwang YH, et al.
Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
Plant Cell Rep., 2016. 35(4): p. 857-65
[PMID:26754793] - Liu X, et al.
The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
Nat Commun, 2016. 7: p. 12768
[PMID:27624486] - Myers ZA, et al.
NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
PLoS Genet., 2016. 12(9): p. e1006333
[PMID:27685091] - Tang Y, et al.
Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
Mol Plant, 2017. 10(2): p. 260-273
[PMID:27876642] - Zhao H, et al.
The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
Front Plant Sci, 2016. 7: p. 2045
[PMID:28119722] - Gnesutta N, et al.
CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer.
Plant Cell, 2017. 29(6): p. 1516-1532
[PMID:28526714] - Bi C,Ma Y,Wang XF,Zhang DP
Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis.
Plant Mol. Biol., 2017. 95(4-5): p. 425-439
[PMID:28924726] - Liu X, et al.
Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering.
Plant Physiol., 2018. 177(1): p. 105-114
[PMID:29599268]
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