PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00038.91
Common NameAMTR_s00038p00150140, LOC18442852
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 575aa    MW: 62605 Da    PI: 6.1103
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00038.91genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.43e-172875148
                                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                             +g+WT  Ed  l+++vk++G g+W+++ ++ g+ R++k+c++rw ++l
  evm_27.model.AmTr_v1.0_scaffold00038.91 28 KGPWTSAEDAVLIEYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 75
                                             79******************************************9986 PP
2Myb_DNA-binding46.58.6e-1581124146
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                              +g++T++E+ l+++++++ G++ W++ a+ ++ gRt++++k++w++
  evm_27.model.AmTr_v1.0_scaffold00038.91  81 KGAFTADEERLIIELHAKIGNK-WARMASQLP-GRTDNEIKNYWNT 124
                                              799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4242375IPR017930Myb domain
SuperFamilySSF466893.74E-3027122IPR009057Homeodomain-like
SMARTSM007172.7E-152777IPR001005SANT/Myb domain
PfamPF002492.4E-152875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-242982IPR009057Homeodomain-like
CDDcd001671.75E-113075No hitNo description
PROSITE profilePS5129424.43976130IPR017930Myb domain
SMARTSM007175.9E-1580128IPR001005SANT/Myb domain
PfamPF002497.4E-1481124IPR001005SANT/Myb domain
CDDcd001671.68E-1083124No hitNo description
Gene3DG3DSA:1.10.10.603.6E-2483129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MGLKDRSSSP SLDESGGCGS GGGGVLKKGP WTSAEDAVLI EYVKKHGEGN WNAVQKHSGL  60
SRCGKSCRLR WANHLRPNLK KGAFTADEER LIIELHAKIG NKWARMASQL PGRTDNEIKN  120
YWNTRIKRRQ RAGLPLYPPD LHLQATGEGQ QSENIGEFTL NENHHSDFLQ SNKLDFPHVS  180
FEALKPNPET LTLPFVPPFS EAPNGGILTR SLGPHQAYTP FIPPSLVHPP KRLRGGESSL  240
LSTFPNGIIP MSPLNQFQSE NYRKNQFHVE TNEKFHRPFS LGHHPFDPDP IEKNNALLGS  300
VVTGSHALLN GTFSTSKPLC GAVKMELPSL QYQDLSDLKG WGVCPSGPPN IEAVESYIQS  360
PPSMAPPTQN ECFSPRSSGL LDALLHESHA LGSSASKSPA SSEVVGPPPR ASSVGPIAGL  420
SEHRRVNTCE EWGGFRDPIS PLGQSAAICL SESTPPLSTT SLLEEIAPAK ASPCALVKTE  480
AVEHFSDSDG EDRFMDFDRR ETSLISDWYE QSWESGKEPS GVTDAITSLL SEDFCNEYKQ  540
LSTESSASNQ AWTLGSCLWN NMPPVCQSDI LDNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32261295107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00348DAPTransfer from AT3G11440Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853124.20.0transcription factor GAMYB
TrEMBLU5CN700.0U5CN70_AMBTC; Uncharacterized protein
STRINGERN145910.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.11e-101myb domain protein 65
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]