PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00037.85
Common NameAMTR_s00037p00177500, LOC18445712
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 541aa    MW: 58076.4 Da    PI: 6.5784
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00037.85genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-173178148
                                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                             +g+WT  Ed +lv++vk++G g+W+++ +  g+ R++k+c++rw ++l
  evm_27.model.AmTr_v1.0_scaffold00037.85 31 KGPWTSAEDAILVEYVKKHGEGNWNAVQKNSGLSRCGKSCRLRWANHL 78
                                             79******************************************9986 PP
2Myb_DNA-binding48.71.7e-1584127146
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                              +g++++eE+ l+++++++lG++ W++ a+ ++ gRt++++k++w++
  evm_27.model.AmTr_v1.0_scaffold00037.85  84 KGSFSPEEERLILHLHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 127
                                              799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.2582678IPR017930Myb domain
SuperFamilySSF466891.61E-3028125IPR009057Homeodomain-like
SMARTSM007172.2E-153080IPR001005SANT/Myb domain
PfamPF002492.5E-153178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-243285IPR009057Homeodomain-like
CDDcd001671.65E-113378No hitNo description
PROSITE profilePS5129425.57779133IPR017930Myb domain
SMARTSM007171.1E-1583131IPR001005SANT/Myb domain
PfamPF002491.0E-1484127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2586132IPR009057Homeodomain-like
CDDcd001672.10E-1186127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MAAAATANAQ ESSSGGGSGG MSTAMAASLK KGPWTSAEDA ILVEYVKKHG EGNWNAVQKN  60
SGLSRCGKSC RLRWANHLRP NLKKGSFSPE EERLILHLHA KLGNKWARMA AQLPGRTDNE  120
IKNYWNTRIK RRQRAGLPLY PAEMQRQVLS HHTRPLNCDG FAPVSAKPAE LQPPLAFDCL  180
KPLNPQQQRQ PPPPPLCFDH PKPRPFFESS NSPQILNCDC YPLPSQMPHL KRFSDRAMSF  240
SARASTLSHV ALAAAPAPAP GPLSFRQMGN FGMARRLMPQ LRGSDMGMEF CGLSEPSIPF  300
NNGGSSSFSI KMELPSSQYA ESVSSNTGSG APPSGGGGPS PMEVVGPTAE PLGQSNSGLL  360
DALLLGTQPM SGCEESGTPV HSQSNFWKNL PPPPQPQVMP ANSNCKVEWT AAEDTILAAP  420
SPATPCALDD SSSAQSSMGM NVKLKKEEMG EKDGNRMEEE EELSTLLDFS TPSGAPPIAD  480
WYSDSTEMSN AQSGVTDSPN TVVFEEDMGL EMRHLTSSLS SNDQIWALGS YAWNNLPGIC  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-32291325107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006855906.10.0uncharacterized protein LOC18445712
TrEMBLU5DAF00.0U5DAF0_AMBTC; Uncharacterized protein
STRINGERN173730.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.13e-72myb domain protein 101
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]