PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00036.88
Common NameAMTR_s00036p00178030
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 394aa    MW: 43634.7 Da    PI: 6.2745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00036.88genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.4e-09317359754
                                              HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                      HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                              ++ rrRR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  evm_27.model.AmTr_v1.0_scaffold00036.88 317 AAARRRRERISDRIRVLQRLVPGG-----TKMDTASMLDEAANYLKFL 359
                                              567*******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.193310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-14316376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-13316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-6318359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-12319375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MCGNGSSSYA PVDEMLMQLV PAIDMINSSS GLNMSQRQEA IRLAADAVLA KSGAGTNWSE  60
ALSTQLNASP LASRSYMNKI SDYMEDAKKS EKCLQSQGLD HGLKSINEDD SNVVLSTTNS  120
IESLDCLLSE TNSNFDNTSM EDDGVSSKLS NGNLDLGQTF TDWDEAASQG PSGPSRPKTI  180
RKQTEEAEDS IRNQVKKPRS LSIQTLQQPK QDPSINNHHH YFDLVQTNSS SSDQGFKLIY  240
ENPPKSKRPR SQKHQKTSTI EFFQANSSYV EADAEAMATM KEMFYRAAAF RPVNMEMEVI  300
DKPKRRNVRI SDDPQTAAAR RRRERISDRI RVLQRLVPGG TKMDTASMLD EAANYLKFLR  360
SQVTALESLG NRLDTTMNCT ASTNPLHLLV PFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303322KRRNVRISDDPQTAAARRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853905.20.0transcription factor bHLH87
RefseqXP_020528803.10.0transcription factor bHLH87
RefseqXP_020528804.10.0transcription factor bHLH87
RefseqXP_020528805.10.0transcription factor bHLH87
SwissprotQ8S3D24e-63BH087_ARATH; Transcription factor bHLH87
TrEMBLU5D1U50.0U5D1U5_AMBTC; Uncharacterized protein
STRINGERN153720.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10281610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]