PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00036.82
Common NameAMTR_s00036p00166880
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 297aa    MW: 33120.4 Da    PI: 9.3284
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00036.82genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41e-10555146
                                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
                          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                                             +++WT +E++ l  +v ++G g W+tI +          R+  ++k++w++
  evm_27.model.AmTr_v1.0_scaffold00036.82  5 KQKWTSDEEDALRAGVDKHGAGKWRTIQKDPEfsqwlSARSNVDLKDKWRN 55
                                             79***********************************99**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.052161IPR017930Myb domain
SuperFamilySSF466897.8E-15258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-13456IPR009057Homeodomain-like
SMARTSM007173.5E-5459IPR001005SANT/Myb domain
PfamPF002491.6E-7555IPR001005SANT/Myb domain
CDDcd116603.50E-20656No hitNo description
SMARTSM005262.7E-10112177IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.2E-11112184IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.4E-11113184IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150419.417114182IPR005818Linker histone H1/H5, domain H15
PfamPF005387.3E-7117175IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGAPKQKWTS DEEDALRAGV DKHGAGKWRT IQKDPEFSQW LSARSNVDLK DKWRNMSVSA  60
GGQGSREKPR IPKVKGVPSL PYSSSPTTSA PLAQDVVPLA VIEPSKSLQD GKAPQLRYNS  120
MIIEALSAMR DPHGCDINSI ACFIEERNEI PPNFRRVLTA KLRRLVAQEK IEKIQSNYKL  180
KNPSSSIKTS FQRQPDQLNR HGPPQSFPGN HVNGVEEAAA YAACRIAEAE YRFELANESA  240
NEAAWISKLA EESDALLLLA KNLYSQCLRD RWRFVLSFSS LGGNSNFFLS YENRNE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011626851.10.0single myb histone 4
TrEMBLU5CQB00.0U5CQB0_AMBTC; Uncharacterized protein
STRINGERN153660.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.27e-48MYB_related family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]