PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00036.48
Common NameAMTR_s00036p00115830, LOC18443618
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family HSF
Protein Properties Length: 369aa    MW: 41984.9 Da    PI: 5.2108
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00036.48genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.6e-35411312101
                                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBT CS
                             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekk 71 
                                              Fl+k+y+++ed++++ ++sw +  n+f+v+d+++f++++LpkyFkhsnf+SFvRQLn+YgFkkv+ ++  
  evm_27.model.AmTr_v1.0_scaffold00036.48  41 FLTKTYDMVEDPATDAVVSWGKGRNTFIVWDSHQFSTHLLPKYFKHSNFSSFVRQLNTYGFKKVDPDR-- 108
                                              9****************************************************************999.. PP

                                              TTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
                             HSF_DNA-bind  72 skskekiweFkhksFkkgkkellekikrkk 101
                                                     weF+++ F  g+++ll++ikr++
  evm_27.model.AmTr_v1.0_scaffold00036.48 109 -------WEFANEGFLGGQRHLLKNIKRRR 131
                                              .......*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.17E-3436130IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.9E-3837130IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-5937130IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.7E-3141130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-184164IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-187991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-1892104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEGVRVKEEN GGFEAMASDH ETIRPRPQPM EGLHDSGPPP FLTKTYDMVE DPATDAVVSW  60
GKGRNTFIVW DSHQFSTHLL PKYFKHSNFS SFVRQLNTYG FKKVDPDRWE FANEGFLGGQ  120
RHLLKNIKRR RPVSQSLHHH PSDAYVELGQ FGLDGELEML ERDRHTLMTE IVKLRQLQQT  180
SRAKLVAMED RLQSNEQKQQ QMMAFLARAL KNPTFIQQLV QKREKMKELG GLGSKKRRLP  240
SNERVENIQE EGPSSHFVNY PSQTHETAET DIDVLFSSLN SDSIFLSFDQ KTQVPGSYGT  300
GGLGFGNEQG SQVIWEDLIN GGFVSDDEER EDRTEIEVEV EDLQAKSSTW DDDVQVLVEQ  360
MGFVGPKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-253613015120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123129LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853865.10.0heat shock factor protein HSF30
RefseqXP_020528878.10.0heat shock factor protein HSF30
SwissprotP411521e-109HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLU5D1P90.0U5D1P9_AMBTC; Uncharacterized protein
STRINGERN153320.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-101heat shock transcription factor A2
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]