PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

MYB

Protein Properties

Length: 307aa MW: 34280.3 Da PI: 6.0989

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00036.42	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.3	2.4e-15	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ed++l d+v ++G g+W++++ + g+ R +k+c++rw +yl evm_27.model.AmTr_v1.0_scaffold00036.42 15 KGLWSPDEDQRLRDYVLRFGHGCWSSVPIRAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP
2	Myb_DNA-binding	56.6	5.9e-18	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T++E+e ++++++ lG++ W+ Ia +++ gRt++++k++w++yl evm_27.model.AmTr_v1.0_scaffold00036.42 68 RGLFTPQEHETILRLHATLGNK-WSQIATHLP-GRTDNEIKNYWNTYL 113 788*****************.*****.***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.672	10	62	IPR017930	Myb domain
SuperFamily	SSF46689	1.24E-28	12	109	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-10	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-13	15	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-20	16	69	IPR009057	Homeodomain-like
CDD	cd00167	8.37E-9	18	62	No hit	No description
PROSITE profile	PS51294	27.001	63	117	IPR017930	Myb domain
SMART	SM00717	1.4E-16	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-16	68	113	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.1E-27	70	117	IPR009057	Homeodomain-like
CDD	cd00167	3.37E-12	71	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MGCKSCETPK PKYKKGLWSP DEDQRLRDYV LRFGHGCWSS VPIRAGLQRN GKSCRLRWIN 60 YLRPGLKRGL FTPQEHETIL RLHATLGNKW SQIATHLPGR TDNEIKNYWN TYLKKKVLKL 120 DDDHLNSNKE SKDFGVPDSH AIEEEPNFQI PKSGSRTTLD NLGDTDQSSS SCSGLHTSQE 180 MYSAASLEDK AGFCSANSVK GFPVPPKLLF SSWLQSNNLS QEPRAIGDTA LFGDLNNFSS 240 CEGIFDNFVE GQGSAWDSEY SFGGETQNGA FWMPCEIETA NSTTGICDNL LPKDIPDNFL 300 FVHDLI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-24	11	117	23	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006853859.1	0.0	transcription factor WER
TrEMBL	U5CQ70	0.0	U5CQ70_AMBTC; Uncharacterized protein
STRING	ERN15326	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52260.1	7e-54	myb domain protein 19

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00036.42
Entrez Gene	18443610

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]