PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00036.4 | ||||||||
Common Name | AMTR_s00036p00023770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | LBD | ||||||||
Protein Properties | Length: 125aa MW: 13823.1 Da PI: 10.8016 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 67.4 | 3.3e-21 | 1 | 82 | 18 | 98 |
DUF260 18 lapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +ap fp +++++f nv++lFG+snv+kl+++ +++er +am+s+ eA++rardP+ G++g++l+l++++ + evm_27.model.AmTr_v1.0_scaffold00036.4 1 MAPFFPPDRMSDFLNVQRLFGVSNVIKLISKFgKPDERAAAMRSIKQEAKVRARDPILGSYGIVLELNKHILH 73 59****************************9978888********************************9998 PP DUF260 90 lkaelallk 98 +++ l+ l evm_27.model.AmTr_v1.0_scaffold00036.4 74 ARTLLNNLC 82 887777655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 1.5E-20 | 1 | 78 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 15.642 | 1 | 85 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MAPFFPPDRM SDFLNVQRLF GVSNVIKLIS KFGKPDERAA AMRSIKQEAK VRARDPILGS 60 YGIVLELNKH ILHARTLLNN LCQQLTFCRA QHHRHLHGDS SFGTNSMHAP PPPPLLSQPP 120 PAPA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006853821.2 | 2e-86 | LOB domain-containing protein 22 | ||||
TrEMBL | U5D4K3 | 6e-86 | U5D4K3_AMBTC; Uncharacterized protein | ||||
STRING | ERN15288 | 9e-87 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 2e-21 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00036.4 |
Publications ? help Back to Top | |||
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