PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00036.29
Common NameAMTR_s00036p00077430, LOC18443597
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 427aa    MW: 46822.6 Da    PI: 8.8765
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00036.29genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-056789123
                                             EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                             ++C++C+k F r  nL+ H r H
  evm_27.model.AmTr_v1.0_scaffold00036.29 67 FVCEICNKGFQRDQNLQLHRRGH 89
                                             89*******************88 PP
2zf-C2H213.60.00019143165123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                              +kC++C+k++  +s+ k H +t+
  evm_27.model.AmTr_v1.0_scaffold00036.29 143 WKCEKCSKRYAVQSDWKAHSKTC 165
                                              58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.32E-76689No hitNo description
Gene3DG3DSA:3.30.160.601.4E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.6E-56789IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0176789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355240108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.32E-7138163No hitNo description
SMARTSM00355130143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MSNLTSACGE ISVSSGNRAE NSSSHSQPIA SPNPALVKRK RSLPGNPDPD AEVIALSPKT  60
LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSS KEVKKRVYVC PEPSCIHHDP  120
ARALGDLTGI KKHFCRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR  180
RDSFTTHRAF CDALAQESGR PTTSSLNPLL PPQLISSTIS LIPPPSVVPP LMLHQEIHNS  240
GLSQNPLELP PPFFSNQSDP ELSHFHGLSS HASHSNNSGN TMSATALLQK AAQMGATMSR  300
KEPPQMTTNA PTTSGFAQCF SSSGTTSLKE MMLSLSRSGF QSFEDGFNGI RRQSDNLEGM  360
LNHYRSGEDA QEELTRDFLG LKALSQFGIG GLDGCMSSYG QSSTDGLNHN LQNESTLFSN  420
SKAWQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34139207371Zinc finger protein JACKDAW
5b3h_F2e-34139207371Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853846.10.0protein indeterminate-domain 11
SwissprotQ8H1F51e-122IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLU5D4M70.0U5D4M7_AMBTC; Uncharacterized protein
STRINGERN153130.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-115C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]