PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00035.43
Common NameAMTR_s00035p00205430
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family AP2
Protein Properties Length: 578aa    MW: 63520.8 Da    PI: 7.0987
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00035.43genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.17.7e-17176225155
                                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                              s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  evm_27.model.AmTr_v1.0_scaffold00035.43 176 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 225
                                              78*******************......55************************997 PP
2AP239.51.4e-12268318155
                                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                              s+++GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  evm_27.model.AmTr_v1.0_scaffold00035.43 268 SKFRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDSEVEAARAYDKAAIKCNG 318
                                              79********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-15176234IPR016177DNA-binding domain
PfamPF008477.0E-9176225IPR001471AP2/ERF domain
SMARTSM003803.1E-32177239IPR001471AP2/ERF domain
CDDcd000181.07E-10177232No hitNo description
PROSITE profilePS5103217.899177233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-17177233IPR001471AP2/ERF domain
CDDcd000182.59E-24268328No hitNo description
PfamPF008472.9E-8268318IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-16268328IPR016177DNA-binding domain
SMARTSM003802.6E-31269332IPR001471AP2/ERF domain
PROSITE profilePS5103215.04269326IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-15269326IPR001471AP2/ERF domain
PRINTSPR003672.2E-5270281IPR001471AP2/ERF domain
PRINTSPR003672.2E-5308328IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MWDLNDSPEE RRGGALVGDS GSFEGEDDDK GKGGSASNED DNSNSSSAIV FEGSDAESGK  60
KDKSGGNRIF GFSVLQQQQD SNCSSESSEP ENSNNNNNTN VVTRQFFPII GGGEKEGDSD  120
QLSLQVRSDG SGSGSLPLPR AHWVGVKFCQ SERLKGMEVS SQPIKKSRRG PRSRSSQYRG  180
VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFSLDDYEED  240
LKQMNNLTKE EFVHVLRRQS TGFPRGSSKF RGVTLHKCGR WEARMGQFLG KKYVYLGLFD  300
SEVEAARAYD KAAIKCNGRE AVTNFDPSIY DNEIAATAGR GGGGRGDEAD HNLDLSLGSW  360
NSSKRESFES LGADEERLGL GFGGVDPSSS SSILIQPSSF HQSFFDWRTT NPRNVKPKQF  420
DEKFKSPEDQ RSGVGVEQMC FSSSGHASPS FPPAYAHLRR RSEVPLLHFH PAPLPLHGVP  480
YHIQQYQSDG ERLGRLSLVI QGEQQQQVNN NNNKSLGGIS ITNGWPAPAQ IFATAAASSG  540
FPPQIIHQQR QQLPPPPPPS QPSWMHKNGF HSLMRTT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006850494.20.0floral homeotic protein APETALA 2 isoform X1
TrEMBLW1PXD10.0W1PXD1_AMBTC; Uncharacterized protein
STRINGERN120750.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-112AP2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]