PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00032.36
Common NameAMTR_s00032p00057800, LOC18443059
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 290aa    MW: 32627.4 Da    PI: 5.277
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00032.36genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-161663148
                                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                             +g+WT+ Ed +lv ++k +G g+W++ ++  g+ R++k+c++rw +yl
  evm_27.model.AmTr_v1.0_scaffold00032.36 16 KGAWTPSEDMKLVSYIKNHGHGNWRALPKQAGLLRCGKSCRLRWTNYL 63
                                             79******************************99************97 PP
2Myb_DNA-binding51.23e-1669114148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                              rg+++ eE+e ++++++++G++ W++Ia++++ gRt++++k+ w+++l
  evm_27.model.AmTr_v1.0_scaffold00032.36  69 RGNFSREEEETIIKLHELWGNR-WSLIASRLP-GRTDNEIKNVWNTHL 114
                                              89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.8771163IPR017930Myb domain
SuperFamilySSF466894.49E-2913110IPR009057Homeodomain-like
SMARTSM007171.5E-121565IPR001005SANT/Myb domain
PfamPF002494.5E-151663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-241770IPR009057Homeodomain-like
CDDcd001671.10E-91863No hitNo description
PROSITE profilePS5129425.62164118IPR017930Myb domain
SMARTSM007174.2E-1568116IPR001005SANT/Myb domain
PfamPF002494.6E-1569114IPR001005SANT/Myb domain
CDDcd001675.42E-1171114No hitNo description
Gene3DG3DSA:1.10.10.607.0E-2671118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRGRAPCCE KVGLNKGAWT PSEDMKLVSY IKNHGHGNWR ALPKQAGLLR CGKSCRLRWT  60
NYLRPDIKRG NFSREEEETI IKLHELWGNR WSLIASRLPG RTDNEIKNVW NTHLKKRLGS  120
KVKSSCFGDP SSSCGSSSQS SSSNCTQEDQ SNPKEANPSF EFDLSPKNCH PNLLEDTFEI  180
PIEPELGFFD AFNDIFDDNS SLVSSLDGPT NSNGDKPQIM GFEEVTDEKE FANWAKFLER  240
ELDLKEIENA QPSHAKDDGA IQPNPCLIDE RVESSPIYFD KWPSSPLLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141205110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853322.10.0transcription factor MYB6
TrEMBLU5CXA20.0U5CXA2_AMBTC; Uncharacterized protein
STRINGERN147890.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-67myb domain protein 15
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]