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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00032.24 | ||||||||
Common Name | AMTR_s00032p00045230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | bHLH | ||||||||
Protein Properties | Length: 233aa MW: 25207.7 Da PI: 6.9047 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.2 | 1.4e-08 | 67 | 113 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 e+Er+RR+++ Lr+llP +K s ++ +A YI +Lq evm_27.model.AmTr_v1.0_scaffold00032.24 67 EVERQRRSEMAALCVSLRSLLPIeY---LRGKRSTSDQMNQAASYITHLQ 113 79*********************77...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.88E-11 | 52 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.823 | 60 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.03E-7 | 61 | 117 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-9 | 65 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.1E-6 | 67 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MDLISGDAME FISGDEQLFS PFFLPNLQTQ DGIPTDLDAP PAPESAAANP PGHPAPAGGC 60 RKIPRGEVER QRRSEMAALC VSLRSLLPIE YLRGKRSTSD QMNQAASYIT HLQKKIEELV 120 EVRDNLKRAC KCGFKMSPDP GRGVMEQLEV RECGEGVEVV MGGPRGAACA SRVVGAIEEE 180 SMGLEVVSYV YTTTGDRSFD VVKSRRSARG GGATADIRKI KRQLVQALQP HH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020528526.1 | 1e-171 | transcription factor bHLH118-like | ||||
TrEMBL | U5D062 | 1e-169 | U5D062_AMBTC; Uncharacterized protein | ||||
STRING | ERN14777 | 1e-170 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1638 | 8 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25410.1 | 2e-21 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00032.24 |
Publications ? help Back to Top | |||
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