PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00032.229
Common NameAMTR_s00032p00221670, LOC18443261
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 317aa    MW: 35459.6 Da    PI: 7.3949
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00032.229genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-181360148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              rg W++eEde+l+++v+ +G ++W++++++ g+ R++k+c++rw +yl
  evm_27.model.AmTr_v1.0_scaffold00032.229 13 RGLWSPEEDEKLIRYVTTYGHRCWSSVPKEAGLQRCGKSCRLRWINYL 60
                                              788*******************************************97 PP
2Myb_DNA-binding51.22.8e-1666109146
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                               rg+++++E+ +++d++++ G++ W+ Ia++++ gRt++++k++w++
  evm_27.model.AmTr_v1.0_scaffold00032.229  66 RGSFSPQEERIIIDVHNLVGNR-WAQIAKHLP-GRTDNEVKNYWNS 109
                                               899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-27463IPR009057Homeodomain-like
PROSITE profilePS5129419.135860IPR017930Myb domain
SuperFamilySSF466892.51E-2911107IPR009057Homeodomain-like
SMARTSM007179.2E-141262IPR001005SANT/Myb domain
PfamPF002491.4E-161360IPR001005SANT/Myb domain
CDDcd001675.28E-121660No hitNo description
PROSITE profilePS5129425.95461115IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-2664116IPR009057Homeodomain-like
SMARTSM007175.9E-1665113IPR001005SANT/Myb domain
PfamPF002494.0E-1566109IPR001005SANT/Myb domain
CDDcd001673.76E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGHHCCNKQK VRRGLWSPEE DEKLIRYVTT YGHRCWSSVP KEAGLQRCGK SCRLRWINYL  60
RPDLKRGSFS PQEERIIIDV HNLVGNRWAQ IAKHLPGRTD NEVKNYWNSC IKKKLVSQGL  120
DPNTDNNISL PSANSTALMR EKQSCANNTW IESREMRELP QLLNQESRAS SGFAILPPTP  180
PILFSTHMRA FSLSETPLPC LSTEKEWSGN SLWASNTEAA DLEGQRPLSM FLEAADFDGC  240
NDTNSNRVNN SSNSESDLSV VNAQSFGYGY GCGYGGVSPF EQFDVDFMGS PTVTSGFSSQ  300
GILRNVRSLD QHLWGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853515.10.0myb-related protein 308
TrEMBLU5D0R50.0U5D0R5_AMBTC; Uncharacterized protein
STRINGERN149820.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.13e-77myb domain protein 67
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]