PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm_27.model.AmTr_v1.0_scaffold00032.103 | ||||||||
Common Name | AMTR_s00032p00142260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 128aa MW: 14128.1 Da PI: 5.9688 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 60.7 | 4.1e-19 | 21 | 74 | 47 | 100 |
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e evm_27.model.AmTr_v1.0_scaffold00032.103 21 QELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALTQAE 74 799**********************************************99976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.4 | 1 | 75 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.0E-17 | 21 | 72 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 128 aa Download sequence Send to blast |
MVSVICKWWE WRTDIPGSWH QELPEHQRGD AVSSMVYEAN ARVRDPVYGC VGAISSLQQQ 60 IDALQTQLAL TQAEVVQLRM RASMLSSLVG GPMDGSLPPN KHGVHHAKSM FAVEVDQPNL 120 SETLWTC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-17 | 21 | 77 | 57 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-17 | 21 | 77 | 57 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011626627.1 | 8e-74 | LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 5e-25 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | U5CNW8 | 1e-89 | U5CNW8_AMBTC; Uncharacterized protein | ||||
STRING | ERN14856 | 2e-90 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-27 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm_27.model.AmTr_v1.0_scaffold00032.103 |
Publications ? help Back to Top | |||
---|---|---|---|
|