PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00031.57
Common NameAMTR_s00031p00134850, LOC18444853
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NF-YB
Protein Properties Length: 163aa    MW: 18573.3 Da    PI: 4.2445
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00031.57genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB44.73.1e-14321022494
                                    NF-YB  24 nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                                              +  is++a     e +  fi ++++ a+d cq+ kr+tin++d++ al ++ f ++ epl+v l+ +r+ 
  evm_27.model.AmTr_v1.0_scaffold00031.57  32 DVNISNEALSAFSESARIFIHYLSATANDICQESKRQTINAEDVFKALEEIDFPEFTEPLRVSLEDFRKK 101
                                              4568999999999******************************************************986 PP

                                    NF-YB  94 e 94 
                                              +
  evm_27.model.AmTr_v1.0_scaffold00031.57 102 K 102
                                              5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.1E-315143IPR009072Histone-fold
SuperFamilySSF471137.79E-266128IPR009072Histone-fold
PfamPF008083.8E-103279IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MEVDELPRSI VKRMVKEKLS YLSKVDDEPS KDVNISNEAL SAFSESARIF IHYLSATAND  60
ICQESKRQTI NAEDVFKALE EIDFPEFTEP LRVSLEDFRK KKAFKKSKET NKKRKSEEEP  120
ESNVIGSEGK GEETEEGGHT EKEDMDEQEE DCGDEGKEDE EE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A9e-1269818100DNA polymerase epsilon subunit D
5y27_A9e-1269818100DNA polymerase epsilon subunit D
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199114KKKAFKKSKETNKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006855071.11e-112DNA polymerase epsilon subunit 3
TrEMBLU5D8521e-111U5D852_AMBTC; Uncharacterized protein
STRINGERN165381e-111(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP78621516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-38nuclear factor Y, subunit B11
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]