PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00031.2
Common NameAMTR_s00031p00017860
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 474aa    MW: 52273.7 Da    PI: 8.3647
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00031.2genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1322.6e-10189230445
                                             XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                  bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                                              k  rr+++NReAA++sR+RKka++++Le    +L++  ++L
  evm_27.model.AmTr_v1.0_scaffold00031.2 189 AKTLRRLAQNREAAKKSRLRKKAYVQQLESSKIKLTQLEQDL 230
                                             6889*************************8777777666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-6186249IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.059188232IPR004827Basic-leucine zipper domain
PfamPF001707.6E-8189231IPR004827Basic-leucine zipper domain
CDDcd147086.87E-21190242No hitNo description
SuperFamilySSF579591.69E-6190232No hitNo description
Gene3DG3DSA:1.20.5.1705.0E-8191234No hitNo description
PROSITE patternPS000360193208IPR004827Basic-leucine zipper domain
PfamPF141445.3E-30270345IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MASNNNTRRI SEVGLSDSEP STQHLVYGVL HGISPPSSNF IDQHGSTAYD FGELEEALIP  60
KVLQNDGDRK PLLGIHPPPT LEIFPSWPVR YQPTPRAHSH QSGESTTDSG SAQNTGSQLE  120
PESPVSSSQK SQPNRRSSDP SLHQKQERSD MAPAPSDSTA HHHNQSKTLV DKRGASSSTE  180
RVGSKTLDAK TLRRLAQNRE AAKKSRLRKK AYVQQLESSK IKLTQLEQDL QRARAQGLFI  240
AGAGGGSNVS SGAAIFDMEH ARWIEENQRH MAELRAGLNA HLPDTDLRLI LDGCLGHYDE  300
IFRLKGIAAK ADVFHVFSGL WLTPAERCFL WMGGFKPSEL LKILVPQLEP LTEQQFIGIC  360
NLQQSSQQAE EALSQGLEAL HQSLADTVVG GGSLGDPPNH HVTNYMAHMA IALARLANLE  420
SFVRQADNLR QQTLHQLRRI LTVRQAVRCF LAIGEYYSRL RALSSLWASR PRE*
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020529591.10.0transcription factor TGA2.2 isoform X1
SwissprotQ93XM61e-166TGA9_ARATH; Transcription factor TGA9
TrEMBLU5D7X60.0U5D7X6_AMBTC; Uncharacterized protein
STRINGERN164830.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP64961119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-137bZIP family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  3. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]