PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00030.93
Common NameAMTR_s00030p00146410, LOC18444377
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 330aa    MW: 37447 Da    PI: 8.325
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00030.93genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.3e-141461148
                                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                             rg+W + Ed ll+++++ +G g+W++ +++ g+ R++k+c++rw +yl
  evm_27.model.AmTr_v1.0_scaffold00030.93 14 RGPWIAREDTLLKRYIETHGEGRWRSLPKKAGLLRCGKSCRLRWMNYL 61
                                             89******************************99************97 PP
2Myb_DNA-binding51.13e-1667112148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                              rg+  ++E+el+v+++++lG++ W++Ia +++ gRt++++k++w+++l
  evm_27.model.AmTr_v1.0_scaffold00030.93  67 RGNIKQDEEELIVRLHALLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                                              677789****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.585961IPR017930Myb domain
SuperFamilySSF466891.88E-2611108IPR009057Homeodomain-like
SMARTSM007173.5E-101363IPR001005SANT/Myb domain
PfamPF002491.6E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-211568IPR009057Homeodomain-like
CDDcd001671.93E-81661No hitNo description
PROSITE profilePS5129425.48962116IPR017930Myb domain
SMARTSM007175.7E-1566114IPR001005SANT/Myb domain
PfamPF002494.1E-1468112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2469116IPR009057Homeodomain-like
CDDcd001671.78E-1072112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGRAPCCSKV GLLRGPWIAR EDTLLKRYIE THGEGRWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPNIKRGNI KQDEEELIVR LHALLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKNLRSKG  120
IDPRTHKPIS TQSPNSSNSK QESTSNKKSR APKRKGKDER EREHCAPKIH LPKPNRISNT  180
TFTMPISHQR PRNVEIIAPT KNVSTMSPTS QEKNTNHESF HLDQKQSSMG EDLYGVGTSN  240
LVEDCLSWGA EDEWLSTSNT ESPCDNMLEK VYEEYLDLLN CDHDSILGSK EGNLINEEGE  300
DSGSDGWDCT YWEGSVLNFP SIPSDNTFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-22121162105MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-22121162105C-Myb DNA-Binding Domain
1msf_C7e-22121162105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854612.10.0myb-related protein 308 isoform X1
TrEMBLU5D0Y50.0U5D0Y5_AMBTC; Uncharacterized protein
STRINGERN160790.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-68myb domain protein 5
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]