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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00029.440 | ||||||||
Common Name | AMTR_s00029p00245970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | TCP | ||||||||
Protein Properties | Length: 128aa MW: 14211.9 Da PI: 10.4085 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 94.3 | 2.4e-29 | 37 | 104 | 4 | 71 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssas 71 kdrhsk++T +g+RdR vRl a++a++f+d+qd G+d++sk+++WL+++akpai+el + + ++s evm_27.model.AmTr_v1.0_scaffold00029.440 37 WKDRHSKVCTVKGPRDRCVRLTAHTAIQFYDVQDWRGYDRPSKAVDWLINKAKPAIDELKKRTHGQSS 104 59**********************************************************99444432 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.604 | 37 | 95 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 9.8E-27 | 38 | 102 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
PENSSENQRR RLSFQSRGGR GEIVEVEGGH IVRAIGWKDR HSKVCTVKGP RDRCVRLTAH 60 TAIQFYDVQD WRGYDRPSKA VDWLINKAKP AIDELKKRTH GQSSSHGNAP CPFGEVDLGG 120 APHKRSA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-16 | 42 | 95 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-16 | 42 | 95 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 99 | KKRTH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011623141.1 | 6e-79 | transcription factor PCF5, partial | ||||
Swissprot | Q8LPR5 | 3e-38 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | W1PPS9 | 2e-89 | W1PPS9_AMBTC; Uncharacterized protein (Fragment) | ||||
STRING | ERN09809 | 4e-90 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-29 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00029.440 |