PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00029.355
Common NameAMTR_s00029p00226800, LOC18437881
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 381aa    MW: 41959.3 Da    PI: 8.6888
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00029.355genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-05152174223
                                               EETTTTEEESSHHHHHHHHHH.T CS
                                   zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                               +C++Cg+ F+ + +L+ H+ + H
  evm_27.model.AmTr_v1.0_scaffold00029.355 152 PCSICGEIFNKPQLLELHQAVkH 174
                                               6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.538151179IPR007087Zinc finger, C2H2
PROSITE patternPS000280153174IPR007087Zinc finger, C2H2
SuperFamilySSF563992.4E-15178379No hitNo description
Gene3DG3DSA:3.90.228.104.6E-8179379IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
METLGSFFGS LRHLSLILFH FCFCLFISSH CFKSTSNPPI PEKRKHSSSA TNPKKLVTSS  60
WSFMKKLFSC HSASSSSNGS LSRPRTPPGS STRLSQASSL SSHATVSLST PTSRDNTLSL  120
STPPHKKPCH DSCNDLEPHP LLSLSNRIAL IPCSICGEIF NKPQLLELHQ AVKHAVSELT  180
DRDTAKNIVK IIFQTSWLKR EKLPDIQRIL KINNSLKILA KFEEYRETIK ATALKSSVHK  240
QARCVADGNE VLRFHCCTFT CSLGLNEACS LCNHHYCSLC GIIRHGFSSK LDGISCYSSS  300
YKAHGSIPAD LEREFSFMNV KRAMLVCRVI AGRIAYDEGM SEKEGFDSVA GGCGDSSGLE  360
ELLVFNPRAL LPCFVIIYSM *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848143.10.0uncharacterized protein LOC18437881
TrEMBLW1PPL50.0W1PPL5_AMBTC; Uncharacterized protein
STRINGERN097240.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP96611112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.16e-79C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]