PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00029.245
Common NameAMTR_s00029p00183640
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 382aa    MW: 41737.8 Da    PI: 6.9378
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00029.245genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.8e-17954147
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                              +g+W++eEd  l ++v ++G ++W++Iar ++ gR++k+c++rw + 
  evm_27.model.AmTr_v1.0_scaffold00029.245  9 KGPWSPEEDAVLSRLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 54
                                              79******************************.***********985 PP
2Myb_DNA-binding56.85.3e-1861105147
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                               r+++T+eEd  +v a++ +G++ W++Iar ++ gRt++ +k++w++ 
  evm_27.model.AmTr_v1.0_scaffold00029.245  61 RKPFTEEEDRTIVAAHAIHGNK-WAAIARLLQ-GRTDNAIKNHWNST 105
                                               789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.369455IPR017930Myb domain
SuperFamilySSF466891.33E-307102IPR009057Homeodomain-like
SMARTSM007172.1E-15857IPR001005SANT/Myb domain
PfamPF002491.1E-16954IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-261062IPR009057Homeodomain-like
CDDcd001671.25E-141153No hitNo description
PROSITE profilePS5129426.24756110IPR017930Myb domain
SMARTSM007171.6E-1660108IPR001005SANT/Myb domain
PfamPF002491.8E-1561105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2363109IPR009057Homeodomain-like
CDDcd001672.07E-1263106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MNGSDERIKG PWSPEEDAVL SRLVSKFGAR NWSLIARGIP GRSGKSCRLR WCNQLDPCVK  60
RKPFTEEEDR TIVAAHAIHG NKWAAIARLL QGRTDNAIKN HWNSTLRRKC LELEKLNRAG  120
LERVPQQSPY QSPNENLSAD SFKSLDEREV ANCENASNQH EDKAQTKDTT NVGEEAKVGP  180
NLFKPVPRLS AFSPYNSTDG PVNSPSLSRL GSLRFPSILT LKPDNGLFQM VNDVCGGPRV  240
PVRCGHGCCG TENHKQSTNS LLGPEFVEHL EPPLSAHEFS SVVAELGKLS WPKSGGLEIG  300
SHDLYRTENG HVGFPPKNDA DQVSLIGSQN EAMKIDGEEA NGSLHNDYGD GDKLVSMMKE  360
MLSSQIAKHA LVMAAQVDGL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-3861091104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848033.20.0transcription factor MYB1
TrEMBLW1PP870.0W1PP87_AMBTC; Uncharacterized protein
STRINGERN096140.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-82myb domain protein 109
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]