PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00028.24
Common NameAMTR_s00028p00089390, LOC18438749
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family SAP
Protein Properties Length: 445aa    MW: 48585.4 Da    PI: 4.923
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00028.24genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP477.58.5e-14624435454
                                      SAP   5 sssssseseegseggeggdass.....gesegpsssrqr.aanevwpePflealatqvaidasrslGrla 68 
                                              sss ++ +++g+e+  ++   s       + ++s  r + ++n+vwpePf+e+la++va++a +s+G la
  evm_27.model.AmTr_v1.0_scaffold00028.24   2 SSSTENGEDSGEEEAVAST--SrletrRRVSASSAARLIaSTNGVWPEPFVESLAVNVAMEAYNSVGPLA 69 
                                              2222333333332222222..123333455566666666689**************************** PP

                                      SAP  69 aasalanvfqvcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfd 138
                                              a +alan+f vcstwr+vs s+ lw+ l++ +W  ++l r+ Wr ey +rhrta+nfr+r+++++tlq++
  evm_27.model.AmTr_v1.0_scaffold00028.24  70 AGPALANLFMVCSTWRSVSTSETLWRVLCSNVWGFSTLTRASWRSEYAFRHRTASNFRNRQSRHFTLQLE 139
                                              ********************************************************************** PP

                                      SAP 139 padvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhvstflpqhrdrlGrfsravsGivisd 208
                                              p++      a++ +Cr++ lsd+yla Gf dG+vr fdl+tr+h+  + p h drlG++sravsG+vi +
  evm_27.model.AmTr_v1.0_scaffold00028.24 140 PTSP-----ASTPTCRRIGLSDRYLALGFLDGSVRAFDLRTRAHLGSYCPAHSDRLGPYSRAVSGLVIDN 204
                                              *843.....34678******************************************************** PP

                                      SAP 209 srlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaetee 278
                                               rlvfa ldG+++   i g      rr+l+G+vv++G+ vdf G+gr+wvGl+aGvpGra ++Wda tee
  evm_27.model.AmTr_v1.0_scaffold00028.24 205 DRLVFALLDGNVYEGDISG---WVFRRVLAGNVVDNGTCVDFNGNGRFWVGLFAGVPGRAVRVWDAVTEE 271
                                              *****************99...679********************************************* PP

                                      SAP 279 lvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivs 348
                                              + fvGG ltdP+av+GW +lte   ++Grvrv     +vaCt++r+ v+ +  ++ +++   +   ++v+
  evm_27.model.AmTr_v1.0_scaffold00028.24 272 TLFVGGDLTDPDAVRGWRLLTEPHRTLGRVRVGAGGLVVACTESRVSVV-FGAEDEIYE---SFGDFMVG 337
                                              *********************************************9655.344455555...5678**** PP

                                      SAP 349 sldasneayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegy 417
                                              ++da+ e  +vv +   at+r   +l++ c+f+v+g a+ + lgC+n   + v++ gv+  W++ + e  
  evm_27.model.AmTr_v1.0_scaffold00028.24 338 CFDAHGERCLVVSRDEEATIRHLPDLNRTCEFEVEGvATNEALGCMNWTQGFVCSEGVIGTWDLRSGE-N 406
                                              ************************************999*************************9977.8 PP

                                      SAP 418 lyslrervgevnalvaddrhvavsssdgtihlldfga 454
                                              ly++re  ge+ a+vadd hva+ ++d+ +hl+ f+a
  evm_27.model.AmTr_v1.0_scaffold00028.24 407 LYHFREDLGEATAIVADDLHVAAVTTDALLHLWSFAA 443
                                              9**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.501.1E-774137No hitNo description
SuperFamilySSF813833.49E-874122IPR001810F-box domain
SuperFamilySSF509785.4E-16143280IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.2E-13145441IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509785.4E-16331440IPR017986WD40-repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MSSSTENGED SGEEEAVAST SRLETRRRVS ASSAARLIAS TNGVWPEPFV ESLAVNVAME  60
AYNSVGPLAA GPALANLFMV CSTWRSVSTS ETLWRVLCSN VWGFSTLTRA SWRSEYAFRH  120
RTASNFRNRQ SRHFTLQLEP TSPASTPTCR RIGLSDRYLA LGFLDGSVRA FDLRTRAHLG  180
SYCPAHSDRL GPYSRAVSGL VIDNDRLVFA LLDGNVYEGD ISGWVFRRVL AGNVVDNGTC  240
VDFNGNGRFW VGLFAGVPGR AVRVWDAVTE ETLFVGGDLT DPDAVRGWRL LTEPHRTLGR  300
VRVGAGGLVV ACTESRVSVV FGAEDEIYES FGDFMVGCFD AHGERCLVVS RDEEATIRHL  360
PDLNRTCEFE VEGVATNEAL GCMNWTQGFV CSEGVIGTWD LRSGENLYHF REDLGEATAI  420
VADDLHVAAV TTDALLHLWS FAAL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848994.10.0transcriptional regulator STERILE APETALA
TrEMBLW1PTG10.0W1PTG1_AMBTC; Uncharacterized protein
STRINGERN105750.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9756912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-109SAP family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]