PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00027.150
Common NameAMTR_s00027p00244500
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 1611aa    MW: 176715 Da    PI: 5.0937
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00027.150genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34.1e-0615881610326
                                                S---SGGGGTS--TTTTT-SS-SS CS
                                   zf-CCCH    3 telCrffartGtCkyGdrCkFaHg 26  
                                                ++ C+ f+++G+Ck G++C F H+
  evm_27.model.AmTr_v1.0_scaffold00027.150 1588 QKVCK-FHESGHCKKGSSCDFLHP 1610
                                                57899.*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM001510.0013452537IPR019835SWIB domain
Gene3DG3DSA:1.10.245.103.7E-26455538IPR003121SWIB/MDM2 domain
SuperFamilySSF475923.27E-21456534IPR003121SWIB/MDM2 domain
PfamPF022012.9E-16459532IPR003121SWIB/MDM2 domain
SMARTSM007196.3E-46596706IPR004343Plus-3 domain
PROSITE profilePS5136028.227596729IPR004343Plus-3 domain
SuperFamilySSF1590421.83E-31597726IPR004343Plus-3 domain
PfamPF031266.8E-24601704IPR004343Plus-3 domain
SuperFamilySSF552776.67E-1710211085IPR003169GYF domain
CDDcd000728.51E-1410321087No hitNo description
PROSITE profilePS5082915.93510321086IPR003169GYF domain
SMARTSM004446.4E-1610331088IPR003169GYF domain
Gene3DG3DSA:3.30.1490.404.7E-1710341086IPR003169GYF domain
PfamPF022138.6E-1210351077IPR003169GYF domain
SuperFamilySSF902299.94E-515851609IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.43615851610IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010964Biological Processregulation of chromatin silencing by small RNA
GO:0032776Biological ProcessDNA methylation on cytosine
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042393Molecular Functionhistone binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1611 aa     Download sequence    Send to blast
MDEEDPNDVY RPATIESPYD PRVAIVEEDP SDVYRPLHFD HSLDPGHAFM DCMHETRLEE  60
LQAQQYGHGN VHGMEHSQMG DFEAIHGVNS EDFEPIPESD SMVSVDENVT EDVEPIPERS  120
NRASTDEQLM EDFEPIPESG SRVSMEEKEM EDLKVIPENY SWVSVEETEA ENLQTVPETE  180
NLQTMPGTES LQTIPETENL QTMPDTESLQ TMPETRICKP CLTQRVCRPC LRQRICRPCL  240
KLRLKWLRNQ VKPAGESGKG VGRPGLNRRL LQGERTKKTC VLYASMVENW CFVTGGFVQR  300
HIIQLALTGT QLFFVQRVDG TVAGTFVAIV KNQLISCAAH AEIDFDDRTS WEFLFKEYWL  360
DLKRKLSLTL EELSKARNPS KDSSSVVRKD VSSDELYDAN DDHGSVSDDS SVQIETPPAR  420
KKPKRRSKSL PKDEIPQSAP HVADVAEIST PKDLEVWASK ELLEFVGHMK DGDTSRLSHF  480
ELQDLLLKYI KQNKLRDPRK QSQIICDSRL QNLFGKPRVG HFEMLKLIES HFLTKEVSSE  540
VSAHDTQEGA LDSENNQMDT EGARDATLKT GHDKKRKSRK KVDERGHEAN QNDYAAIDVH  600
NINLIYLRRN LVEDLLDDLE KFQDKVVGSF VRIRISSTSN KQDMYRLVQV LSTSKAAEFY  660
KTGRKTTDIL LDILNLNKTE AISIDSISNQ EFSEEECKRL RQSIKCGLLS RLTVGEIQER  720
ARAIQAVKVN DTHAQWDNDP MYSEAGSPGE SPGIRDYVPV YTKTSPESAE DMKDAEDIRA  780
HPAILVDVKI QRMHLFYLCI SCISSTSAWK HAKDDHCIIR IMEDCYYGEL YFMQFFGEPR  840
VLKSPEERER KLNELPDVHT DPNMDPDHES DDAEEEPDDT KSENYRTPRD ARFSSRKGND  900
PISPGKGASS EGWDGGTRRS SGGTRDSSRN SVGKSGSWER GGSGASSTGN TWDRSKSAST  960
WGTPKEEKGD ETCNQQTNQT LRNQSNDWSS SKTQPVIIGS APSSNASKSE LPSSLVGVNA  1020
PTAQLVVPSE TEKVWHYQDP SGAIQGPFSM TQLRKWSTTG YFPAELKIWK VLERQEDAML  1080
LTDALAGKFL KERQSSSWEG TMTGVAEIKE GLAGGSSNPN QSWSSQAHGQ RYQTTPQFPA  1140
TFATASNQRS ESLGGIGWNT GQNHGNSWNS NRELGAHSGG NNANDGGDSL KDWSASSLVV  1200
NTKSSKEVWE SGEQTSKNEL SELPTPTPKS SSGGFTGDME LENKQTGVSL TTKPENGSWG  1260
GQGNTWSSQS LSSFSGSVPM VSVPKGNETL NQDIGNDLPS PTPGATPTST LEKGTSNIGA  1320
GFETSPSVTS VCAGEALVTK DSVVAVSSLG QGSLSVWSPQ APVTAKLSQD SHFFNMQGSV  1380
VETVGGFSQA PSVNSQVPNI IPNPTINDHG SQSNGLVQID LNPRAVLDSW GQAQERVHPW  1440
GGASGLSGHQ WSAPTSVTID RTSGSGWVSV AAQENFNPNS GLGTTKESPN PNSSWGTALG  1500
NPNPNSGWGA VENPSPNLVW GSSGNSNMGW GANKASEGGG HGGWGPQRHD GDGLSSGRGG  1560
GWYGDSGHGG RPWSGRPGGG GPRPSRGQKV CKFHESGHCK KGSSCDFLHP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1567576LKTGHDKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011625190.10.0zinc finger CCCH domain-containing protein 19
TrEMBLW1PT110.0W1PT11_AMBTC; Uncharacterized protein
STRINGERN108460.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1807911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.11e-102nucleic acid binding;zinc ion binding;DNA binding
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]