PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00026.80
Common NameAMTR_s00026p00162850, LOC18438578
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family TALE
Protein Properties Length: 483aa    MW: 52068.7 Da    PI: 6.002
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00026.80genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.34.7e-074214532254
                                              SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                                 Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                               +yp+++e+ +L +++gL+ +q+ +WF N+R +
  evm_27.model.AmTr_v1.0_scaffold00026.80 421 WPYPTEDEKVRLVQETGLQLKQINNWFINQRKR 453
                                              58*****************************87 PP
2ELK28.63.2e-10374395122
                                      ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                              ELKh+L+++Y+++++++++E++
  evm_27.model.AmTr_v1.0_scaffold00026.80 374 ELKHELKQGYKEKIVDIREEIL 395
                                              9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-20204248IPR005540KNOX1
PfamPF037904.2E-18206247IPR005540KNOX1
SMARTSM012561.0E-26262317IPR005541KNOX2
PfamPF037912.7E-19267316IPR005541KNOX2
PfamPF037891.1E-6374395IPR005539ELK domain
SMARTSM011886.1E-4374395IPR005539ELK domain
PROSITE profilePS512139.969374394IPR005539ELK domain
PROSITE profilePS5007111.564394457IPR001356Homeobox domain
SuperFamilySSF466894.28E-16396460IPR009057Homeodomain-like
SMARTSM003897.4E-11396461IPR001356Homeobox domain
CDDcd000864.06E-12397458No hitNo description
Gene3DG3DSA:1.10.10.609.7E-25401458IPR009057Homeodomain-like
PfamPF059201.2E-16414453IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MAFHNLSQEM GGMPHFSEQH LGGENEALRT IISDQLHHSQ SAIPPSEQKE HKLIMDPTKR  60
QPQPRPQQQI GGGAGGGGGG APPTWLSNAI LRQQSAGGAH FDDANQAAAV GARKWCGCAP  120
GSRCVQCSFL HLQTGDDVTA VSSDSMIGGG AGMSGDVNNG SGELVESEKS EAQQQQHQQQ  180
QGGGGGGGGG GGGGGGGVGG WESARYKAEI LSHPLYEQLL SAHVACLRIA TPVDQLPRID  240
AQLAQSQHVV AKYSVLGASG QIVPGNGDDK DLDQFMTHYV LLLCSFKEQL QQHVRVHAME  300
AVMACWDLEQ SLQSLTGVSP GEGTGATMSD DDDDQADSDT NLYEGSLDGQ DTMGFGPLIP  360
TESERSLMER VRQELKHELK QGYKEKIVDI REEILRKRRA GKLPGDTTSL LKAWWQSHSK  420
WPYPTEDEKV RLVQETGLQL KQINNWFINQ RKRNWHSNPS SSSAVKSKRK SHAGDDDGDR  480
FM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A4e-13397461872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1467471KRKSH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848824.10.0homeobox protein knotted-1-like 2 isoform X1
SwissprotP480001e-180KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLW1PT020.0W1PT02_AMBTC; Uncharacterized protein
STRINGERN104050.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-159KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]