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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm_27.model.AmTr_v1.0_scaffold00026.127 |
Common Name | AMTR_s00026p00233150, LOC18438625 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family |
HD-ZIP |
Protein Properties |
Length: 272aa MW: 30410.6 Da PI: 8.0914 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm_27.model.AmTr_v1.0_scaffold00026.127 | genome | TAGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 59.7 | 4.5e-19 | 130 | 184 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tkeq Le+ F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k
evm_27.model.AmTr_v1.0_scaffold00026.127 130 RKKLRLTKEQSALLEDSFKEHSTLNPKQKQALAEQLNLRPRQVEVWFQNRRARTK 184
788899***********************************************98 PP
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2 | HD-ZIP_I/II | 126.3 | 1.4e-40 | 130 | 219 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkra 69
+kk+rl+keq++lLE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+
evm_27.model.AmTr_v1.0_scaffold00026.127 130 RKKLRLTKEQSALLEDSFKEHSTLNPKQKQALAEQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRC 198
69******************************************************************* PP
HD-ZIP_I/II 70 ydalkeenerLekeveeLreel 91
+++l++en+rL+ke +eL+ +l
evm_27.model.AmTr_v1.0_scaffold00026.127 199 CETLTDENRRLQKELQELK-AL 219
******************9.55 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009735 | Biological Process | response to cytokinin |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MDDFCNTGLV LGLGRGISLE KLPKPEPKRP CFRLDRLFPS PSEPCLTLAL TETPSPGAVP 60 QKIQVRIDVN KAYEESGAPN CSPTGSSVSS FSNLHRELFN GGVKREREQA TEELEVEKRV 120 SDEEEEGNAR KKLRLTKEQS ALLEDSFKEH STLNPKQKQA LAEQLNLRPR QVEVWFQNRR 180 ARTKLKQTEV DCEFLKRCCE TLTDENRRLQ KELQELKALK FASPVYMQLP AATLTMCPSC 240 ERIGAGDAST RSSFAKAAHF FSGPFTHPAA C*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 178 | 186 | RRARTKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Publications
? help Back to Top |
- Amborella Genome Project
The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] - Song L, et al.
A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]
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