PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00025.50
Common NameAMTR_s00025p00072580, LOC18440553
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Trihelix
Protein Properties Length: 306aa    MW: 34408.3 Da    PI: 7.8254
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00025.50genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.91.3e-2335124185
                                 trihelix   1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykk 63 
                                              rWt+qe+ +Lie++r  e+r r+ +         + +W+++s++++++g++r+p+qC+++w+ l+++yk+
  evm_27.model.AmTr_v1.0_scaffold00025.50  35 RWTRQEIVVLIEGKRVEESRGRKYRvfdggpaNTESKWSSISSYCKRHGVNREPVQCRKRWSTLSRDYKR 104
                                              8*********************864444555599************************************ PP

                                 trihelix  64 ikegekkrtsessstcpyfdql 85 
                                              i+e+e+++  +++s + + ++l
  evm_27.model.AmTr_v1.0_scaffold00025.50 105 IREWERSN--KDQSFWLLRNDL 124
                                              ******95..566668877777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-63598IPR009057Homeodomain-like
PfamPF138373.4E-1335114No hitNo description
PROSITE profilePS500906.5863599IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MECQHGSGQV AETRDDPISN SPSNVDPIAP PRFPRWTRQE IVVLIEGKRV EESRGRKYRV  60
FDGGPANTES KWSSISSYCK RHGVNREPVQ CRKRWSTLSR DYKRIREWER SNKDQSFWLL  120
RNDLRRESKL PGFFDRELYD IIERAFSCGR QQGGCSSFVK EDETDPNAGR GTTEEGLFSD  180
AELSEAQEDV PESPGKEITG SPSATPPPGM SSEKPLPPNS EKDSAPKSTG LKRTHASDDE  240
ENGFKVRRRI LSILERNGRV LAAHIESHNL NCEMDRNQRS EQAQKLVGVL GKLAEALSKI  300
ADKLP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006850755.10.0trihelix transcription factor ASR3
TrEMBLW1PWZ00.0W1PWZ0_AMBTC; Uncharacterized protein
STRINGERN123360.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-69Trihelix family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]