PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00025.412
Common NameAMTR_s00025p00250050
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GATA
Protein Properties Length: 569aa    MW: 63060.4 Da    PI: 6.8914
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00025.412genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA369.7e-122854935
                                      GATA  9 TplWRrgpdgnktLCnaCGlyyrkkgl 35
                                              TplWR+gp  ++ LCnaCG ++r kg+
  evm_27.model.AmTr_v1.0_scaffold00025.412 28 TPLWRNGPPDKPVLCNACGSRWRTKGT 54
                                              9*******55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.7E-62756No hitNo description
Gene3DG3DSA:3.30.50.102.4E-82754IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.57E-112875No hitNo description
PfamPF003201.4E-92854IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MAYVEMVYMP IHILKNTPEI GLLYHVATPL WRNGPPDKPV LCNACGSRWR TKGTLANYMP  60
MHSGGFAPSD NRLPKGKSAP EKAKDQRLQK KRTSSLVDDD LMNTSRTTGD RVRGCEEAGS  120
TRSSSVSGIT YSEGCFPRKY IPEKDYSDKA AMHNFVWESP VPSKKRSFIS RPRPFGEKLS  180
KGASHDGDIS FVSSSSEDDL GYGVNSNFGS TEIGLGTTVL SHPRSKTVDD DSEASSLMAD  240
SRGCNIVDAS YVNIRDDDEM GNRRKTSDLG ILHNSDARRS NLTMERFLLS STSLALCSEI  300
KDSLNYETFS TLLTEEEQSQ LMRLVSSDDR SNVPESLKLM FRSEQFEGAL VNFQRLISKG  360
MFCGTEFGGN NQLLKVFRQL LFTTELTKSG WMSGYSLLYK QFEHKQFESS KVNAKKKVMN  420
IPNRNGDGNL KSSSLGGEDN FLRGEIARSD RYELLINSSG QPPGHSICGT KSQSKIATSS  480
GVRESTQLCA STPWKNYQRE ETHQGSINTG NSISKESPLS DCEHWLSPEF DAVDEASDSV  540
LLFDVPSNNS FPQAELLPKL EWNTSPTR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011625816.10.0GATA transcription factor 26 isoform X2
TrEMBLW1PWZ60.0W1PWZ6_AMBTC; Uncharacterized protein
STRINGERN126980.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27491530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.15e-48GATA transcription factor 26
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]