PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

M-type_MADS

Protein Properties

Length: 207aa MW: 22796.2 Da PI: 9.0559

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00025.385	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.9	6.3e-24	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i+++ rqv fskRr+g++KKA+EL++LC+aevavi+fs gk y++ evm_27.model.AmTr_v1.0_scaffold00025.385 9 KKINDQDARQVCFSKRRAGLFKKASELCILCGAEVAVIVFSLAGKAYTF 57 6899********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	26.366	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.8E-34	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.14E-28	1	73	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.50E-39	2	73	No hit	No description
PRINTS	PR00404	6.0E-20	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.6E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.0E-20	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.0E-20	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009960	Biological Process	endosperm development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MGRRKIEIKK INDQDARQVC FSKRRAGLFK KASELCILCG AEVAVIVFSL AGKAYTFGHP 60 CVDSVLDRFH RHQTSGPTGP TPGMSGPTHG LVCEYAELQR QLELEKKKGA SLAKKTRQEH 120 PGPLGQQQFW WDADLQSLCN YQLEQFLSAL LELKAKVDKR AIELTCGQPG GGAHGFAWVP 180 PPATAMKSYG GQDYFMKLMY GDTTPH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-15	1	69	1	69	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-15	1	69	1	69	Myocyte-specific enhancer factor 2B
1tqe_R	1e-15	1	69	1	69	Myocyte-specific enhancer factor 2B
1tqe_S	1e-15	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_A	1e-15	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_B	1e-15	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_C	1e-15	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_D	1e-15	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_E	1e-15	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_F	1e-15	1	69	1	69	Myocyte-specific enhancer factor 2B
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006851090.3	1e-154	agamous-like MADS-box protein AGL61
TrEMBL	W1PXS0	1e-152	W1PXS0_AMBTC; Uncharacterized protein
STRING	ERN12671	1e-153	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-33	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00025.385

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]