PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00025.337 | ||||||||
Common Name | AMTR_s00025p00231520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | C3H | ||||||||
Protein Properties | Length: 402aa MW: 43707.6 Da PI: 9.2754 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.5 | 2.2e-08 | 6 | 27 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e+C+ff+r G Ck+G+rCk H+ evm_27.model.AmTr_v1.0_scaffold00025.337 6 EPCKFFLR-GSCKFGERCKNLHP 27 89******.**********8887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 8.7E-7 | 2 | 28 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.394 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.67E-5 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.6E-5 | 5 | 26 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-6 | 6 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MNRSPEPCKF FLRGSCKFGE RCKNLHPRPQ QSMPNPFGQQ QSRSNPFGFG VQNTSQSKVA 60 FGGFQIPDKP LPQNKWNRFS PVANGNPKPS TARQTESQQK ALSTQSRRPT DSLQKTHGST 120 CTDPEICKKQ IIENSMEEPL WKLTCYGHWN YLPCDITGDI SFEELRAAAY DDARRGVPLQ 180 SIVERERNLL QAKLLEFENL RRNPYVIPRK SSSFVPLPSP ATNPNISPPG FQQNMPPSVS 240 SFSQLGMSTS TGLNTRQQSS FQVSSQTSGS SNSAFGAPPK DAFGQQGPFQ ISNQTSPGFG 300 TSNSAFGTPG LFGNKVPNQP FGSSAATMSN SQIPTSPSFP MFTNNYSPGL FGGPNVGFNP 360 GGSGVNTSNI SLADDKQVRL APGEPDIWSK EEWEVGEPQV A* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011625857.1 | 0.0 | zinc finger CCCH domain-containing protein 46 | ||||
TrEMBL | W1PWR8 | 0.0 | W1PWR8_AMBTC; Uncharacterized protein | ||||
STRING | ERN12623 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP7813 | 14 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 8e-56 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00025.337 |
Publications ? help Back to Top | |||
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