PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00025.337
Common NameAMTR_s00025p00231520
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 402aa    MW: 43707.6 Da    PI: 9.2754
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00025.337genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.2e-08627426
                                              ---SGGGGTS--TTTTT-SS-SS CS
                                   zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                                              e+C+ff+r G Ck+G+rCk  H+
  evm_27.model.AmTr_v1.0_scaffold00025.337  6 EPCKFFLR-GSCKFGERCKNLHP 27
                                              89******.**********8887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.7E-7228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.394229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.67E-5327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-5526IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-6627IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MNRSPEPCKF FLRGSCKFGE RCKNLHPRPQ QSMPNPFGQQ QSRSNPFGFG VQNTSQSKVA  60
FGGFQIPDKP LPQNKWNRFS PVANGNPKPS TARQTESQQK ALSTQSRRPT DSLQKTHGST  120
CTDPEICKKQ IIENSMEEPL WKLTCYGHWN YLPCDITGDI SFEELRAAAY DDARRGVPLQ  180
SIVERERNLL QAKLLEFENL RRNPYVIPRK SSSFVPLPSP ATNPNISPPG FQQNMPPSVS  240
SFSQLGMSTS TGLNTRQQSS FQVSSQTSGS SNSAFGAPPK DAFGQQGPFQ ISNQTSPGFG  300
TSNSAFGTPG LFGNKVPNQP FGSSAATMSN SQIPTSPSFP MFTNNYSPGL FGGPNVGFNP  360
GGSGVNTSNI SLADDKQVRL APGEPDIWSK EEWEVGEPQV A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011625857.10.0zinc finger CCCH domain-containing protein 46
TrEMBLW1PWR80.0W1PWR8_AMBTC; Uncharacterized protein
STRINGERN126230.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP78131415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.18e-56C3H family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]