PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00025.26
Common NameAMTR_s00025p00048410
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 702aa    MW: 78914.6 Da    PI: 6.6093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00025.26genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.2e-14490536455
                                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                              +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  evm_27.model.AmTr_v1.0_scaffold00025.26 490 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 536
                                              7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.8E-5530212IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625486535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-19488552IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-18490551IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11490535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-15490540No hitNo description
SMARTSM003531.9E-17492541IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MVPTPSSSSK PNWSMATAET PALSSAAAQL QRLLQLAVQS VQWTYSVFWQ ICPQQGVLIW  60
GDGYYNGAIK TRKTVQPMEV NAEEVCLQRS QQLRELYDSL SAGETNQPSK RPCAALSPED  120
LTESEWFYLM CISFTFPLGI GIPGRAASRR HYIWLTGANE EDSKVFTRAI LAKVVPVQTI  180
VCIPVMDGVL ELGTTERVQE DSSMVQQLKA LFMDDQGQLQ PQKPVHSEHS TSKPATSTDS  240
FPYHRDHHRP HRQHHHQQHQ HHQQPHDQQQ EQPPLPWQAV EIEEEGDGES ESESEREMQT  300
KDIQVGLSPE GCSDPNPINM TAHTSLTNPP CQEQHLPMPT NNLLLDDTNP WPLLHDDISI  360
GLPSSGATMH RDDMVATQED GHYSKTVAAV LQRNNTNNNA APPFLVTYSC QFPKSEDTVF  420
SKWKWNNQAA TTTSQGGGGQ QWLLKYILFS VPFLHSKYRD ENSPKARGDG ESGSRLRRGV  480
TTPQDELSAN HVLAERRRRE KLNERFIILR SLVPFVTKMD KASILGDTIE YVKQLRKRIQ  540
DLESRNRQME INLKTRASVS SETQKLSSTK DRTNSNTSAV LTTAQTLNDR SRTMALDKRK  600
RHILEGARTK MAAGGCITDV QVSIIESDAL LELQCPYRNR LLLEIMQTLN ELHFETQSVQ  660
SSSDNGVLIA EFRAKVKENP NGEKVTLVEA KQAIHHILEN C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-21302129192Transcription factor MYC3
4rqw_B4e-21302129192Transcription factor MYC3
4rru_A1e-203020848227Transcription factor MYC3
4rs9_A4e-21302129192Transcription factor MYC3
4ywc_A1e-203020848227Transcription factor MYC3
4ywc_B1e-203020848227Transcription factor MYC3
4yz6_A4e-21302129192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1494499ERRRRE
2495500RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011625677.10.0basic helix-loop-helix protein A isoform X2
TrEMBLW1PQK70.0W1PQK7_AMBTC; Uncharacterized protein
STRINGERN123120.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP52261116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-82bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]