PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00025.26 | ||||||||
Common Name | AMTR_s00025p00048410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | bHLH | ||||||||
Protein Properties | Length: 702aa MW: 78914.6 Da PI: 6.6093 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.9 | 4.2e-14 | 490 | 536 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ evm_27.model.AmTr_v1.0_scaffold00025.26 490 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 536 7999**********************8.....8*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 6.8E-55 | 30 | 212 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.625 | 486 | 535 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.94E-19 | 488 | 552 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-18 | 490 | 551 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-11 | 490 | 535 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.48E-15 | 490 | 540 | No hit | No description |
SMART | SM00353 | 1.9E-17 | 492 | 541 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 702 aa Download sequence Send to blast |
MVPTPSSSSK PNWSMATAET PALSSAAAQL QRLLQLAVQS VQWTYSVFWQ ICPQQGVLIW 60 GDGYYNGAIK TRKTVQPMEV NAEEVCLQRS QQLRELYDSL SAGETNQPSK RPCAALSPED 120 LTESEWFYLM CISFTFPLGI GIPGRAASRR HYIWLTGANE EDSKVFTRAI LAKVVPVQTI 180 VCIPVMDGVL ELGTTERVQE DSSMVQQLKA LFMDDQGQLQ PQKPVHSEHS TSKPATSTDS 240 FPYHRDHHRP HRQHHHQQHQ HHQQPHDQQQ EQPPLPWQAV EIEEEGDGES ESESEREMQT 300 KDIQVGLSPE GCSDPNPINM TAHTSLTNPP CQEQHLPMPT NNLLLDDTNP WPLLHDDISI 360 GLPSSGATMH RDDMVATQED GHYSKTVAAV LQRNNTNNNA APPFLVTYSC QFPKSEDTVF 420 SKWKWNNQAA TTTSQGGGGQ QWLLKYILFS VPFLHSKYRD ENSPKARGDG ESGSRLRRGV 480 TTPQDELSAN HVLAERRRRE KLNERFIILR SLVPFVTKMD KASILGDTIE YVKQLRKRIQ 540 DLESRNRQME INLKTRASVS SETQKLSSTK DRTNSNTSAV LTTAQTLNDR SRTMALDKRK 600 RHILEGARTK MAAGGCITDV QVSIIESDAL LELQCPYRNR LLLEIMQTLN ELHFETQSVQ 660 SSSDNGVLIA EFRAKVKENP NGEKVTLVEA KQAIHHILEN C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 4e-21 | 30 | 212 | 9 | 192 | Transcription factor MYC3 |
4rqw_B | 4e-21 | 30 | 212 | 9 | 192 | Transcription factor MYC3 |
4rru_A | 1e-20 | 30 | 208 | 48 | 227 | Transcription factor MYC3 |
4rs9_A | 4e-21 | 30 | 212 | 9 | 192 | Transcription factor MYC3 |
4ywc_A | 1e-20 | 30 | 208 | 48 | 227 | Transcription factor MYC3 |
4ywc_B | 1e-20 | 30 | 208 | 48 | 227 | Transcription factor MYC3 |
4yz6_A | 4e-21 | 30 | 212 | 9 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 494 | 499 | ERRRRE |
2 | 495 | 500 | RRRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011625677.1 | 0.0 | basic helix-loop-helix protein A isoform X2 | ||||
TrEMBL | W1PQK7 | 0.0 | W1PQK7_AMBTC; Uncharacterized protein | ||||
STRING | ERN12312 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5226 | 11 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 3e-82 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00025.26 |
Publications ? help Back to Top | |||
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