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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm_27.model.AmTr_v1.0_scaffold00024.49 |
| Common Name | AMTR_s00024p00098860, LOC18439237 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
C2H2 |
| Protein Properties |
Length: 447aa MW: 50085.9 Da PI: 8.4975 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00024.49 | genome | TAGP | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 18.6 | 5.2e-06 | 75 | 97 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C++C++ F r nL+ H r+H
evm_27.model.AmTr_v1.0_scaffold00024.49 75 YVCEICNQGFQRDQNLQMHRRRH 97
9*********************9 PP
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| 2 | zf-C2H2 | 15.3 | 5.7e-05 | 152 | 174 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C +C+k + +s++k H++t+
evm_27.model.AmTr_v1.0_scaffold00024.49 152 WTCDKCSKGYAVQSDYKAHLKTC 174
58*******************98 PP
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| 3 | zf-C2H2 | 10.9 | 0.0014 | 182 | 200 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS
zf-C2H2 5 dCgksFsrksnLkrHirtH 23
dCg++Fsr +++ H+ t+
evm_27.model.AmTr_v1.0_scaffold00024.49 182 DCGRVFSRVESFIEHQDTC 200
9***************987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009590 | Biological Process | detection of gravity |
| GO:0009959 | Biological Process | negative gravitropism |
| GO:0009965 | Biological Process | leaf morphogenesis |
| GO:0010031 | Biological Process | circumnutation |
| GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process |
| GO:0048444 | Biological Process | floral organ morphogenesis |
| GO:2000012 | Biological Process | regulation of auxin polar transport |
| GO:2000904 | Biological Process | regulation of starch metabolic process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 447 aa
Download sequence Send
to blast |
MFGPPSPGST PSLGNCSTSI EHGIIASPFP PISSSFPSCL DNGGSKRKRR PAGTPDPDAE 60
VVSLSPRTLL ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKRDNSE VKKRVFVCPE 120
PSCLHHDPCH ALGDLVGIKK HFRRKHSNHK QWTCDKCSKG YAVQSDYKAH LKTCGTRGHS 180
CDCGRVFSRV ESFIEHQDTC NAGRERQDFQ TTQQVSLSRT VSSPCNSSER NMGSWATLKM 240
LGLSPSFQLP NDYHHNLELQ LLPSPNNQIQ RTPQRNQDQK AASAPTTNSN PNFIESEATR 300
LQLSIGNTGN FTSIRNSSDC ESTQFAGNTI SDRNSSDFLR LAMEERRQAE QARQEAKREM 360
ELAEREFANA KRIRQQAQAE LDKAQILKDQ ATKHINSTIL QITCQACKNH FQISDENSLA 420
MSYMSSVVTE GEGENDNRQQ GKIPSI*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP95 | 16 | 242 |
| Publications
? help Back to Top |
- Amborella Genome Project
The Amborella genome and the evolution of flowering plants.
Science, 2013. 342(6165): p. 1241089
[PMID:24357323] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Kim JY,Ryu JY,Baek K,Park CM
High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
New Phytol., 2016. 209(1): p. 265-79
[PMID:26256266] - Ryu JY,Kim JY,Park CM
Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
Plant Signal Behav, 2015. 10(11): p. e1093715
[PMID:26452406] - Qu Y, et al.
Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
J. Exp. Bot., 2017. 68(17): p. 4851-4867
[PMID:28992128] - Shi H, et al.
Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
J. Pineal Res., 2018. 65(2): p. e12494
[PMID:29607541]
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