PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00024.40 | ||||||||
Common Name | AMTR_s00024p00085480, LOC18439226 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 186aa MW: 21282 Da PI: 8.4985 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.9 | 9.1e-32 | 29 | 83 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 v YkeClkNhAaslG++a+DGCgEfm+s e+++ +lkCaACgCHRnFHRr ++ evm_27.model.AmTr_v1.0_scaffold00024.40 29 MVLYKECLKNHAASLGSYATDGCGEFMES-LEQSDRGGLKCAACGCHRNFHRRVPV 83 689*************************9.6778*******************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-17 | 30 | 82 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.1E-27 | 30 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.9E-26 | 32 | 80 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.695 | 32 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-25 | 104 | 172 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.28E-16 | 111 | 171 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.7E-25 | 115 | 171 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MEVALTHKRD DHPNTAIPSS SSTPHNEPMV LYKECLKNHA ASLGSYATDG CGEFMESLEQ 60 SDRGGLKCAA CGCHRNFHRR VPVSPKSIKR EEREICFYVD EGKREQRERG DGVIRKRIRT 120 RFSVEQKERM LWFAEKMGWR IQKDQEKEIQ AFCEEIGVSR QVFKVWMHNH KGAAGNNNNA 180 SDVTQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 7e-20 | 114 | 171 | 16 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006849460.1 | 1e-139 | zinc-finger homeodomain protein 6 | ||||
Swissprot | Q9M9S0 | 8e-41 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | W1PTK9 | 1e-137 | W1PTK9_AMBTC; Uncharacterized protein | ||||
STRING | ERN11041 | 1e-138 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 5e-43 | homeobox protein 31 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00024.40 |
Entrez Gene | 18439226 |
Publications ? help Back to Top | |||
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