PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

MYB

Protein Properties

Length: 154aa MW: 18057.6 Da PI: 10.5609

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00024.329	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.9	3.1e-15	45	89	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W+ eEd++l++ ++ +G+g+W+t +++ g++R k+c++rw +yl evm_27.model.AmTr_v1.0_scaffold00024.329 45 WSHEEDLRLIRHIEAYGKGSWTTLPQKAGLNRNSKSCRLRWMNYL 89 *******************************************97 PP
2	Myb_DNA-binding	45.4	1.9e-14	96	138	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++++eEd+l+++++++ ++ W++Ia +++ gRt+ q+k++w++ evm_27.model.AmTr_v1.0_scaffold00024.329 96 GNFSPEEDDLILRLHRLVENR-WSLIAGRVP-GRTDSQIKNFWNT 138 89*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.313	37	89	IPR017930	Myb domain
SMART	SM00717	4.6E-11	41	91	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.23E-28	41	136	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-21	44	96	IPR009057	Homeodomain-like
Pfam	PF13921	1.6E-14	45	104	No hit	No description
CDD	cd00167	1.23E-8	45	89	No hit	No description
PROSITE profile	PS51294	22.138	90	144	IPR017930	Myb domain
SMART	SM00717	7.5E-13	94	142	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-23	97	141	IPR009057	Homeodomain-like
CDD	cd00167	4.64E-10	97	138	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MHFFNELLGY GGISCETLQA SYKPPMEREE TSAKKHAKRS GKRLWSHEED LRLIRHIEAY 60 GKGSWTTLPQ KAGLNRNSKS CRLRWMNYLR PDIKHGNFSP EEDDLILRLH RLVENRWSLI 120 AGRVPGRTDS QIKNFWNTRY RGKKHIYSSF ITI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-22	45	143	30	127	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269\|PubMed:7920701}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020578104.1	4e-44	transcription repressor MYB6-like
Swissprot	P20025	4e-43	MYB38_MAIZE; Myb-related protein Zm38
TrEMBL	W1PVL6	1e-110	W1PVL6_AMBTC; Uncharacterized protein
STRING	ERN11330	1e-111	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	3e-45	myb domain protein 4

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00024.329

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701]