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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm_27.model.AmTr_v1.0_scaffold00024.223 |
| Common Name | AMTR_s00024p00224850, LOC18439415 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
MYB |
| Protein Properties |
Length: 273aa MW: 30399.1 Da PI: 7.7124 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00024.223 | genome | TAGP | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 49.6 | 8.8e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT++Ed +l ++++ +G g W++ +++ g++R++k+c++rw++yl
evm_27.model.AmTr_v1.0_scaffold00024.223 15 KGAWTAQEDTILTRYINTHGEGKWRALPKRSGLKRCGKSCRLRWLNYL 62
79********************************************97 PP
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| 2 | Myb_DNA-binding | 48.2 | 2.6e-15 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+ + eE++l+++++++lG++ W++Ia +++ gRt++++k++w++
evm_27.model.AmTr_v1.0_scaffold00024.223 68 RGNISCEEEDLIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 112
677788****************.*********.***********986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 273 aa
Download sequence Send
to blast |
MGRRPCYSKE EGLTKGAWTA QEDTILTRYI NTHGEGKWRA LPKRSGLKRC GKSCRLRWLN 60
YLRPNIKRGN ISCEEEDLII RLHNLLGNRW SLIAGRLPGR TDNEIKNYWN TNLGKKHQKN 120
STKNRQGSAN GQGSVLKEEA KPNPVVVRTK ASRCIGITAT TSPVAPEAPT IDPMTESTAH 180
HDKTASSNAP PALSVLPTFM DVDIGDLCIG TEFLQSCEKL VLDNSEDEFG SISLCFQNNF 240
SPDCRDWMEN TFHEGHSSQE SDSLAAFLYS EE*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP5 | 17 | 1784 |
| Publications
? help Back to Top |
- Amborella Genome Project
The Amborella genome and the evolution of flowering plants.
Science, 2013. 342(6165): p. 1241089
[PMID:24357323] - Coego A, et al.
The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
Plant J., 2014. 77(6): p. 944-53
[PMID:24456507] - Liu C,Jun JH,Dixon RA
MYB5 and MYB14 Play Pivotal Roles in Seed Coat Polymer Biosynthesis in Medicago truncatula.
Plant Physiol., 2014. 165(4): p. 1424-1439
[PMID:24948832] - Zhu Z, et al.
Characterization of the cis elements in the proximal promoter regions of the anthocyanin pathway genes reveals a common regulatory logic that governs pathway regulation.
J. Exp. Bot., 2015. 66(13): p. 3775-89
[PMID:25911741] - Liu Y,Shi Z,Maximova SN,Payne MJ,Guiltinan MJ
Tc-MYBPA an Arabidopsis TT2-like transcription factor and functions in the regulation of proanthocyanidin synthesis in Theobroma cacao.
BMC Plant Biol., 2015. 15: p. 160
[PMID:26109181] - Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
Plant Physiol. Biochem., 2016. 102: p. 70-9
[PMID:26913794] - Li Y, et al.
Two IIIf Clade-bHLHs from Freesia hybrida Play Divergent Roles in Flavonoid Biosynthesis and Trichome Formation when Ectopically Expressed in Arabidopsis.
Sci Rep, 2016. 6: p. 30514
[PMID:27465838] - Li C,Zhang B,Chen B,Ji L,Yu H
Site-specific phosphorylation of TRANSPARENT TESTA GLABRA1 mediates carbon partitioning in Arabidopsis seeds.
Nat Commun, 2018. 9(1): p. 571
[PMID:29422671]
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