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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00024.223 | ||||||||
Common Name | AMTR_s00024p00224850, LOC18439415 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB | ||||||||
Protein Properties | Length: 273aa MW: 30399.1 Da PI: 7.7124 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 8.8e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +l ++++ +G g W++ +++ g++R++k+c++rw++yl evm_27.model.AmTr_v1.0_scaffold00024.223 15 KGAWTAQEDTILTRYINTHGEGKWRALPKRSGLKRCGKSCRLRWLNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.6e-15 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + eE++l+++++++lG++ W++Ia +++ gRt++++k++w++ evm_27.model.AmTr_v1.0_scaffold00024.223 68 RGNISCEEEDLIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 112 677788****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.042 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.56E-28 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-14 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.57E-10 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 23.047 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 7.6E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-14 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-23 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.83E-11 | 74 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MGRRPCYSKE EGLTKGAWTA QEDTILTRYI NTHGEGKWRA LPKRSGLKRC GKSCRLRWLN 60 YLRPNIKRGN ISCEEEDLII RLHNLLGNRW SLIAGRLPGR TDNEIKNYWN TNLGKKHQKN 120 STKNRQGSAN GQGSVLKEEA KPNPVVVRTK ASRCIGITAT TSPVAPEAPT IDPMTESTAH 180 HDKTASSNAP PALSVLPTFM DVDIGDLCIG TEFLQSCEKL VLDNSEDEFG SISLCFQNNF 240 SPDCRDWMEN TFHEGHSSQE SDSLAAFLYS EE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 13 | 116 | 5 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006849643.1 | 0.0 | transcription factor WER | ||||
Swissprot | Q9FJA2 | 5e-59 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | W1PTS7 | 0.0 | W1PTS7_AMBTC; Uncharacterized protein | ||||
STRING | ERN11224 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 2e-61 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00024.223 |
Entrez Gene | 18439415 |