PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

MYB

Protein Properties

Length: 273aa MW: 31041.9 Da PI: 5.3101

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00024.222	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l d++k +G g W+t ++ g++R++k+c++rw++yl evm_27.model.AmTr_v1.0_scaffold00024.222 14 KGAWTAQEDKILTDYIKTHGEGKWRTLSQSTGLKRCGKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	56	9.4e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++yl evm_27.model.AmTr_v1.0_scaffold00024.222 67 RGNFSDQEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 112 89******************.*****.***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.41	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	4.4E-29	12	108	IPR009057	Homeodomain-like
SMART	SM00717	3.5E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-14	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	3.75E-9	16	61	No hit	No description
PROSITE profile	PS51294	25.156	62	116	IPR017930	Myb domain
SMART	SM00717	2.2E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-16	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.6E-25	69	115	IPR009057	Homeodomain-like
CDD	cd00167	9.96E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MGRCPCCSKE GLNKGAWTAQ EDKILTDYIK THGEGKWRTL SQSTGLKRCG KSCRLRWLNY 60 LRPDIKRGNF SDQEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT YLVKKFQESS 120 AKNQRAKSMR SEEPVLEEKA KPSPAEEFIV VRTKASRRTG LVAPPARAAP EAPTTELTTE 180 PMGNYNESMA NDTEPTSFKA PILMDFDMED FSIDNEILKS YGEFLLQNKD DEIDTLSLSS 240 QKTLSFDSGE WVGEEFEGEH FSQDLYSLGY FL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-26	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006849642.1	0.0	transcription repressor MYB6
TrEMBL	W1PT62	0.0	W1PT62_AMBTC; Uncharacterized protein
STRING	ERN11223	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	3e-63	myb domain protein 3

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00024.222
Entrez Gene	18439414

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]