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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm_27.model.AmTr_v1.0_scaffold00024.119 |
Common Name | AMTR_s00024p00164620, LOC18439308 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family |
HD-ZIP |
Protein Properties |
Length: 306aa MW: 33978.8 Da PI: 7.2067 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm_27.model.AmTr_v1.0_scaffold00024.119 | genome | TAGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 54.8 | 1.6e-17 | 158 | 212 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k
evm_27.model.AmTr_v1.0_scaffold00024.119 158 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRARQVEVWFQNRRARTK 212
778899***********************************************98 PP
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2 | HD-ZIP_I/II | 124.9 | 3.8e-40 | 158 | 248 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkra 69
+kk+rlskeq++ LEesF+e+++L+p++K +la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr+
evm_27.model.AmTr_v1.0_scaffold00024.119 158 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRC 226
69******************************************************************* PP
HD-ZIP_I/II 70 ydalkeenerLekeveeLreelk 92
+++l+een+rL+ke +eLr +lk
evm_27.model.AmTr_v1.0_scaffold00024.119 227 CETLTEENRRLQKELQELR-ALK 248
******************9.665 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 306 aa
Download sequence Send
to blast |
MELALGLGDG SQSLVLMERY NSSSSKRSSG NGGLGFQMCL GNEERHPPVQ LDLLPLGPVP 60 RPWPSENGNS EAETRSSGHA ASTRGFDVNL IPSTEDGDEE TAVSSPNSTV SSFQMDFAML 120 PYHNNSSING AKRDNDAVTN DVEGERRGSD EEENGLTRKK LRLSKEQSAY LEESFKEHNT 180 LNPKQKLALA KQLNLRARQV EVWFQNRRAR TKLKQTEVDC EYLKRCCETL TEENRRLQKE 240 LQELRALKTA HPFYMHLPAT TLTMCPSCER VASTDNTASN KIPGGGFSHS KPRFYPFSQH 300 KSAAS*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 156 | 162 | TRKKLRL |
2 | 206 | 214 | RRARTKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |