PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00022.382
Common NameAMTR_s00022p00250320
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 281aa    MW: 31594.2 Da    PI: 5.4157
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00022.382genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-192978255
                                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                               y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  evm_27.model.AmTr_v1.0_scaffold00022.382 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFSTAEEAALAYDEAARRLYG 78
                                              69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.54E-332887No hitNo description
Gene3DG3DSA:3.30.730.104.6E-312987IPR001471AP2/ERF domain
PfamPF008473.2E-132978IPR001471AP2/ERF domain
SMARTSM003801.2E-372992IPR001471AP2/ERF domain
PROSITE profilePS5103222.512986IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-212987IPR016177DNA-binding domain
PRINTSPR003671.7E-103041IPR001471AP2/ERF domain
PRINTSPR003671.7E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MESCRKNLMK TCKKGPTRGK GGPQNSSCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFS  60
TAEEAALAYD EAARRLYGPE AHLNLPHIHS NPHSLQKTLS VNWFSSKNFG SNYHSYGVLN  120
LNAQPNVHVI HQRLQEMKKN VNQPPPVSCP LVFSEKGKVN SGPEIEREEK DGLENYGFSA  180
QEKQIDLKEF LEQLGVLKDE QLGVLKEESG SDSSATPPQQ ILLGNNFPAI SETGELDGQD  240
FLWDELEELN GFDHNTDDQT CTIQIEGHED ICLTSSIWDL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-193086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020526280.10.0dehydration-responsive element-binding protein 2F
TrEMBLW1PUP90.0W1PUP9_AMBTC; Uncharacterized protein
STRINGERN117830.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.12e-53ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]