PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

C2H2

Protein Properties

Length: 312aa MW: 35179.5 Da PI: 7.3053

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00022.356	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.0004	235	257	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k F + + ++H +++ evm_27.model.AmTr_v1.0_scaffold00022.356 235 FMCRKCSKAFAVRGDWRTHEKNC 257 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.24E-5	143	173	No hit	No description
PROSITE profile	PS50157	9.64	151	178	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.58	151	173	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.2E-6	151	170	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	153	173	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.64E-6	217	255	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.8E-5	222	255	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	73	235	255	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	140	261	284	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009860	Biological Process	pollen tube growth
GO:0010500	Biological Process	transmitting tissue development
GO:1990058	Biological Process	fruit replum development
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MNDPYSNHFT GGWFNPILHP NSTYTAIPAT PSSSSSSSSS PFCNFLPLDY TQPSSPPLRE 60 ALPLLSLSPR RTDEHENYKE KEELMCEDDE GEVTVALRIG LPSYSGVSHQ GSSGEMMEVD 120 EREKAYPTAT LNKGQYWIPT PAQILIGPTQ FSCPVCCKTF NRYNNMQMHM WGHGSQYRKG 180 PESLRGTQPT AMLRLPCYCC APGCRNNIDH PRAKPLKDFR TLQTHYKRKH GIKPFMCRKC 240 SKAFAVRGDW RTHEKNCGKL WFCICGSDFK HKRSLKDHIK AFGHGHAAYG VDSFEDDDDP 300 ASEIEQDDES Q*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006850176.1	0.0	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-128	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	W1PP31	0.0	W1PP31_AMBTC; Uncharacterized protein
STRING	ERN11757	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP410	15	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-129	C2H2 family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00022.356
Entrez Gene	18439958

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]