PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00022.312
Common NameAMTR_s00022p00231410, LOC18439914
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 372aa    MW: 40036.6 Da    PI: 6.7993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00022.312genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.6e-09216263455
                                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                               +h+ +Er RR++iN ++  L+el+P +    +k    a +L + ++++++Lq
  evm_27.model.AmTr_v1.0_scaffold00022.312 216 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQYLQ 263
                                               8*************************9....899999*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.24E-9210267No hitNo description
SuperFamilySSF474595.76E-15210278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-15212280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.437212262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6216263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-8218268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDSLPESSTS IPFAQGVSEP FHFGEEIRGF SSENHLDSSS FTALLGLQSS EALVLLHPPI  60
SGQNISGKGN SGQNYSTVLN HGEVSTTLPA NASLVERAAK YSVFATKAES DIAPGSFSIE  120
SNSGDTSGKF AGDSDSQSKE GSYVAVDDRT VTICSREKQT MKRKEADQLK VKAGTKKSKG  180
DVENGRGAGS DENVTRSPEK PAYVHVRARR GQATDSHSLA ERARREKINA RMKLLQELVP  240
GCNKISGTAL VLDEIINHVQ YLQRQVEFLS MRLAAVHPRV VDFNFDSFLS SEPFQPFSLG  300
LTASNGVMAA RAEEPAWSPV QVNGVQRPWP TATCANQYEG THSFSVPQNP PPSLANSGTP  360
SLRPNQLKME L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006850132.10.0transcription factor bHLH48 isoform X3
TrEMBLW1PUI60.0W1PUI6_AMBTC; Uncharacterized protein
STRINGERN117130.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.25e-58bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]