PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00022.303
Common NameAMTR_s00022p00228970
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 370aa    MW: 40027.4 Da    PI: 6.3965
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00022.303genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-103033431155
                                               HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                RR +i +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  evm_27.model.AmTr_v1.0_scaffold00022.303 303 VRRTKISERMRRLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 343
                                               6******************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.249292342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-8298348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-13302354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-7303343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.53E-11304347No hitNo description
Gene3DG3DSA:4.10.280.104.7E-15305361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MYGAAQTSPI GLKLNLCNNT KGSSLSQIKE DDRNRGPLMD FGAGTNPLQN TASSLMRYKS  60
APGSLFASLV QDCDDDFLPR SSSPESENVL ARLLSCDSSC LTSESRDLQS HASPDVLEME  120
TKPVCNSGQR LHGDRFVAEN EPEVAQQRSG GFGASPHMVY QHQNPNGSLL RQSSSPAGFL  180
SHLTGENGYS TLRTMGNNFR PGNCSNGLKG HMSFSRQQGN HAGMLPQISE IVSETVGPSS  240
SDEGSLGNGS QGQCYIPGFP VGSWDDSTLV AESLSGFETA ADFSAVRKRI RDLNGKSTSE  300
SQVRRTKISE RMRRLQELVP NMDKQTNTAD MLDLAVEYIK DLQKQVQNLS DSRANCTCSV  360
KQQKPSYPI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011625460.10.0transcription factor bHLH130
TrEMBLW1PV680.0W1PV68_AMBTC; Uncharacterized protein
STRINGERN117040.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-42bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]