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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm_27.model.AmTr_v1.0_scaffold00022.187 |
| Common Name | AMTR_s00022p00176740, LOC18439786 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
C3H |
| Protein Properties |
Length: 301aa MW: 30629.3 Da PI: 9.6043 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00022.187 | genome | TAGP | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 17.3 | 8.4e-06 | 43 | 66 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25
k ++C f+ t C++G++C+F H
evm_27.model.AmTr_v1.0_scaffold00022.187 43 KSKPCTKFFSTTGCPFGESCHFLH 66
678999999999************ PP
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| 2 | zf-CCCH | 20.4 | 8.8e-07 | 104 | 129 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
k + C +f C++G++C+FaH++
evm_27.model.AmTr_v1.0_scaffold00022.187 104 KSRMCANFNTPEGCRFGEKCHFAHSE 129
567899999999************95 PP
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| 3 | zf-CCCH | 38.6 | 1.9e-12 | 268 | 292 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+lC +fa+ G C +GdrC+FaHg
evm_27.model.AmTr_v1.0_scaffold00022.187 268 YKTKLCENFAK-GSCTFGDRCHFAHG 292
9**********.*************8 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 0.62 | 41 | 68 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.718 | 41 | 69 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.79E-6 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.3E-7 | 43 | 66 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF14608 | 0.96 | 49 | 66 | No hit | No description |
| PROSITE profile | PS50103 | 13.225 | 102 | 130 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.96E-7 | 103 | 134 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.1 | 104 | 129 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 8.6E-12 | 104 | 135 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF14608 | 0.11 | 108 | 127 | No hit | No description |
| SuperFamily | SSF54791 | 1.14E-13 | 154 | 226 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 5.4E-10 | 155 | 225 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 13.439 | 156 | 220 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 8.4E-15 | 158 | 225 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 1.77E-12 | 160 | 220 | No hit | No description |
| Pfam | PF00013 | 4.0E-10 | 160 | 222 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:4.10.1000.10 | 2.5E-16 | 266 | 298 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.4E-8 | 267 | 293 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 17.159 | 267 | 294 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.06E-9 | 267 | 298 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 7.6E-10 | 268 | 292 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MDPVEPPRKK PRGDASSNGN GGFKRSNQHF GAYTEKETGL GSKSKPCTKF FSTTGCPFGE 60
SCHFLHYVPG VNVVAQLRQT LGGPLAPSRF GTGPPDPQAL GPIKSRMCAN FNTPEGCRFG 120
EKCHFAHSER ELNRPPLGAS PTGRRFEPSG LGFGASANAK ISVDASLAGA IIGKGGVNSK 180
HICRVTGAKL AIREHESDPN LRNIELEGSF DQINQASVMV RELIASVGGP GGGGAPAGAM 240
AKGFGGGGGG GGGGGGGGGG GGGGGNNYKT KLCENFAKGS CTFGDRCHFA HGASELRKQV 300
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