 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
evm_27.model.AmTr_v1.0_scaffold00022.163 |
| Common Name | AMTR_s00022p00160350 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
| Family |
NAC |
| Protein Properties |
Length: 175aa MW: 19659.4 Da PI: 7.5435 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00022.163 | genome | TAGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 179 | 1.3e-55 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya 69
lppGfrFhPtdeel+++yL+ kv + + ++ i+evd++++ePw+Lp+ +k +ekewyfFs rd+ky+
evm_27.model.AmTr_v1.0_scaffold00022.163 15 LPPGFRFHPTDEELIMFYLATKVFNPSGSTPVSIAEVDLNRCEPWELPEIAKMGEKEWYFFSLRDRKYP 83
79**********************999777556***************8888899************** PP
NAM 70 tgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
tg+r+nrat++gyWkatgkd+e++s+ +g lvg+kktLvfy+grapkg+kt+Wvmheyrl
evm_27.model.AmTr_v1.0_scaffold00022.163 84 TGHRTNRATDAGYWKATGKDREIHSAtNGVLVGMKKTLVFYRGRAPKGQKTNWVMHEYRL 143
************************9978889***************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010014 | Biological Process | meristem initiation |
| GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 175 aa
Download sequence Send
to blast |
MEGVCLCEET NEQGLPPGFR FHPTDEELIM FYLATKVFNP SGSTPVSIAE VDLNRCEPWE 60
LPEIAKMGEK EWYFFSLRDR KYPTGHRTNR ATDAGYWKAT GKDREIHSAT NGVLVGMKKT 120
LVFYRGRAPK GQKTNWVMHE YRLQGDFSYH LACKLDASTV GVAAASPVGH GWIL*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 4e-50 | 3 | 156 | 8 | 158 | NAC domain-containing protein 19 |
| 3swm_B | 4e-50 | 3 | 156 | 8 | 158 | NAC domain-containing protein 19 |
| 3swm_C | 4e-50 | 3 | 156 | 8 | 158 | NAC domain-containing protein 19 |
| 3swm_D | 4e-50 | 3 | 156 | 8 | 158 | NAC domain-containing protein 19 |
| 3swp_A | 4e-50 | 3 | 156 | 8 | 158 | NAC domain-containing protein 19 |
| 3swp_B | 4e-50 | 3 | 156 | 8 | 158 | NAC domain-containing protein 19 |
| 3swp_C | 4e-50 | 3 | 156 | 8 | 158 | NAC domain-containing protein 19 |
| 3swp_D | 4e-50 | 3 | 156 | 8 | 158 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP17 | 15 | 800 |
| Publications
? help Back to Top |
- Amborella Genome Project
The Amborella genome and the evolution of flowering plants.
Science, 2013. 342(6165): p. 1241089
[PMID:24357323] - Chen C, et al.
Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
J. Exp. Bot., 2014. 65(17): p. 4943-58
[PMID:24962999] - Gonçalves B, et al.
A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
Plant J., 2015. 83(4): p. 732-42
[PMID:26119568] - Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
Plant J., 2017. 90(3): p. 435-446
[PMID:28161901] - Espinosa-Ruiz A, et al.
TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
Development, 2017. 144(9): p. 1619-1628
[PMID:28320734] - Koyama T,Sato F,Ohme-Takagi M
Roles of miR319 and TCP Transcription Factors in Leaf Development.
Plant Physiol., 2017. 175(2): p. 874-885
[PMID:28842549]
|
