PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00022.112
Common NameAMTR_s00022p00120000, LOC18439711
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 398aa    MW: 45545.3 Da    PI: 4.4419
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00022.112genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_122.72.1e-07207250447
                                               XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                    bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                                               +k+ +r ++NR +A rsR+R+k+ ++ Le k+k Leae ++L++
  evm_27.model.AmTr_v1.0_scaffold00022.112 207 SKKRKRQIRNRDSALRSRERRKEFVKDLEIKSKYLEAECRRLQN 250
                                               7999**********************************998874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.3E-4203268IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.53206269IPR004827Basic-leucine zipper domain
PfamPF001701.9E-6207250IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.44E-9208264No hitNo description
Gene3DG3DSA:1.20.5.1703.3E-9208264No hitNo description
CDDcd147045.70E-11209259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAELVEESFR EDNWDFTLDD IPDITLDLDI FSEPLVYHPS TPETLTKNAS SFYSPSETLE  60
YFDSLHSHSK TLTENEETTI NGMEQIMTVE ETVEPNITIM EENLDLKIRE MEKALLVEDE  120
QLQDDEGFSE IFFSDIFPEN SEKSSESSPV SGVSSQSVDI FAGEADKQVE PSPESGGLVE  180
SPVIVEDESN VAEEKEEEKE GDEDHLSKKR KRQIRNRDSA LRSRERRKEF VKDLEIKSKY  240
LEAECRRLQN LLGFCYAENN ALRLHIQKRN NEVAAGLVRA KQESAVLPLE SLLLGSLFWL  300
LIMVSAFLSI GPFSVSHPEL VLRLDRSLGQ ELTSLKRLWV RPETLESKPR SPVALLLRRW  360
RFSRTKMKMR AISCSMDLNF RERVSWPLFK DGDLSIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208227KRKRQIRNRDSALRSRERRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006849932.10.0bZIP transcription factor 60
TrEMBLW1PTX60.0W1PTX6_AMBTC; Uncharacterized protein
STRINGERN115130.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP54681518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.15e-11basic region/leucine zipper motif 60
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]