PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

ERF

Protein Properties

Length: 230aa MW: 24561.7 Da PI: 6.2831

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00021.214	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.4	1.8e-18	56	106	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa a++ a+++l+g evm_27.model.AmTr_v1.0_scaffold00021.214 56 PVFRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPTAEMAAHAYDVAALNLKG 106 579**887.******843...6**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.8E-12	56	106	IPR001471	AP2/ERF domain
SMART	SM00380	4.0E-35	57	120	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.131	57	114	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.2E-32	57	115	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.2E-21	57	115	IPR016177	DNA-binding domain
CDD	cd00018	1.36E-29	58	116	No hit	No description
PRINTS	PR00367	2.1E-12	58	69	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.1E-12	96	116	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MEEEPSSPYP QIRVSGSTPC RQKPAAEMTH CVETRPAEET PSRKIAAEKG GGTRHPVFRG 60 VRKRRWGKWV SEIREPRKKS RIWLGSFPTA EMAAHAYDVA ALNLKGRKAA LNFPENADTL 120 PRLATCSARD IQAAAAAAAA AAESCSEAEI SPKSEVSTAG TEDDFWGELP ALWKNGEIFS 180 APEISDFVSE FFGEGFISGI CGATEGDSAA QLVPPACCGL LRASSPPLR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-17	49	115	6	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00120	DAP	Transfer from AT1G01250	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006852608.3	1e-166	ethylene-responsive transcription factor ERF023
Swissprot	Q1ECI2	1e-41	ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBL	W1Q123	1e-164	W1Q123_AMBTC; Uncharacterized protein
STRING	ERN14075	1e-165	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01250.1	2e-42	ERF family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00021.214

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]