PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00021.181
Common NameAMTR_s00021p00209320, LOC18442290
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 285aa    MW: 31744.5 Da    PI: 7.9641
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00021.181genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.42e-34682081128
                                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee....vikevd....iykvePwdLpkkvkaeekewyfF 61 
                                               lp+G++F+Ptd+el+ e+L+ kv++++++l+     +i+++d    i++++P++Lp  v+ + +  +fF
  evm_27.model.AmTr_v1.0_scaffold00021.181  68 LPAGVKFDPTDQELL-EHLEGKVRADSMKLHPlideFIPTLDgesgICSTHPERLP-GVRRDGHVRHFF 134
                                               799************.99********96553333334555545556**********.666777888*** PP

                                       NAM  62 skrdkkyatgkrknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWv 122
                                               ++ +k+y+tg+rk+r+++      + +W++tgk+++v++ +g+++g kk+Lv+y   g+++k+ekt+Wv
  evm_27.model.AmTr_v1.0_scaffold00021.181 135 HRPSKAYTTGTRKRRKVHtgpqggETRWHKTGKTRPVFT-SGTQKGYKKILVLYtnYGKQKKPEKTNWV 202
                                               ***************855445544667************.9999**********6658999******** PP

                                       NAM 123 mheyrl 128
                                               mh+y+l
  evm_27.model.AmTr_v1.0_scaffold00021.181 203 MHQYHL 208
                                               ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-3861227IPR003441NAC domain
PROSITE profilePS5100533.31668227IPR003441NAC domain
PfamPF023656.4E-1669208IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MTWCRGEERD GRREEADQLI DGGGGAGAEH SQQQEQEEGE GGERSSCPSC GHPIPSSQKQ  60
AIQNLPGLPA GVKFDPTDQE LLEHLEGKVR ADSMKLHPLI DEFIPTLDGE SGICSTHPER  120
LPGVRRDGHV RHFFHRPSKA YTTGTRKRRK VHTGPQGGET RWHKTGKTRP VFTSGTQKGY  180
KKILVLYTNY GKQKKPEKTN WVMHQYHLGS QEEEKDGELV VSKVFYQTQP RQCAMDPLLR  240
RRTMKPAYGT NQVEPYDEAG SEKAGSPQLI PNFSVEVDAS AFLG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006852575.10.0NAC domain-containing protein 73
SwissprotO494591e-109NAC73_ARATH; NAC domain-containing protein 73
TrEMBLW1PVI80.0W1PVI8_AMBTC; Uncharacterized protein
STRINGERN140420.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-111NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]