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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm_27.model.AmTr_v1.0_scaffold00021.181 |
Common Name | AMTR_s00021p00209320, LOC18442290 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family |
NAC |
Protein Properties |
Length: 285aa MW: 31744.5 Da PI: 7.9641 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm_27.model.AmTr_v1.0_scaffold00021.181 | genome | TAGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 110.4 | 2e-34 | 68 | 208 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee....vikevd....iykvePwdLpkkvkaeekewyfF 61
lp+G++F+Ptd+el+ e+L+ kv++++++l+ +i+++d i++++P++Lp v+ + + +fF
evm_27.model.AmTr_v1.0_scaffold00021.181 68 LPAGVKFDPTDQELL-EHLEGKVRADSMKLHPlideFIPTLDgesgICSTHPERLP-GVRRDGHVRHFF 134
799************.99********96553333334555545556**********.666777888*** PP
NAM 62 skrdkkyatgkrknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWv 122
++ +k+y+tg+rk+r+++ + +W++tgk+++v++ +g+++g kk+Lv+y g+++k+ekt+Wv
evm_27.model.AmTr_v1.0_scaffold00021.181 135 HRPSKAYTTGTRKRRKVHtgpqggETRWHKTGKTRPVFT-SGTQKGYKKILVLYtnYGKQKKPEKTNWV 202
***************855445544667************.9999**********6658999******** PP
NAM 123 mheyrl 128
mh+y+l
evm_27.model.AmTr_v1.0_scaffold00021.181 203 MHQYHL 208
****98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
GO:0005634 | Cellular Component | nucleus |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 285 aa
Download sequence Send
to blast |
MTWCRGEERD GRREEADQLI DGGGGAGAEH SQQQEQEEGE GGERSSCPSC GHPIPSSQKQ 60 AIQNLPGLPA GVKFDPTDQE LLEHLEGKVR ADSMKLHPLI DEFIPTLDGE SGICSTHPER 120 LPGVRRDGHV RHFFHRPSKA YTTGTRKRRK VHTGPQGGET RWHKTGKTRP VFTSGTQKGY 180 KKILVLYTNY GKQKKPEKTN WVMHQYHLGS QEEEKDGELV VSKVFYQTQP RQCAMDPLLR 240 RRTMKPAYGT NQVEPYDEAG SEKAGSPQLI PNFSVEVDAS AFLG*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Publications
? help Back to Top |
- Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] - Amborella Genome Project
The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] - Sakamoto S,Mitsuda N
Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] - Jervis J, et al.
A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]
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