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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00021.160 | ||||||||
Common Name | AMTR_s00021p00196860, LOC18442269 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | VOZ | ||||||||
Protein Properties | Length: 490aa MW: 54716.1 Da PI: 5.0762 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 429.6 | 4.5e-132 | 214 | 429 | 1 | 216 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsak 69 pppsaflgpkcalwdc+rpaqgsew++dycs +hat+alneg+pg+tpvlrp+gidlkdg+lf+al a+ evm_27.model.AmTr_v1.0_scaffold00021.160 214 PPPSAFLGPKCALWDCPRPAQGSEWCRDYCSDLHATMALNEGPPGMTPVLRPGGIDLKDGPLFSALCAR 282 89******************************************************************* PP VOZ 70 vqgkevgipecegaatakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwh 138 +qgk vgipecegaat+kspwna+elfdls+lege+irewlffdkprrafesgnrkqrslpdy grgwh evm_27.model.AmTr_v1.0_scaffold00021.160 283 TQGKAVGIPECEGAATTKSPWNAPELFDLSVLEGESIREWLFFDKPRRAFESGNRKQRSLPDYCGRGWH 351 ********************************************************************* PP VOZ 139 esrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdslad 207 esrkqvmk+fgglkrsyymdpqp+++fewhlyeyein++d++alyrlelk+vd+kk+akgk + dsl+d evm_27.model.AmTr_v1.0_scaffold00021.160 352 ESRKQVMKDFGGLKRSYYMDPQPLTQFEWHLYEYEINNCDTYALYRLELKQVDGKKNAKGKNMGDSLVD 420 ********************************************************************* PP VOZ 208 lqkklgrlt 216 lq+++grlt evm_27.model.AmTr_v1.0_scaffold00021.160 421 LQQQMGRLT 429 *******98 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MGKGLKNGVS KSSSQRVFKD KAKTKVDDLQ GMFNDLQCAR KESRPNDVAV LEEQVHQMLR 60 EWKAELNEAS PTSSLLAGSL GSSELSSDMR RLLQLHEEDD DATSALAPPA SPKLHCDAHN 120 IQAQDAEFHD DFYTNQASQQ QAFHEINGRE GIHSEDLTNN LNDGLEGSIL LEDYQFSLYQ 180 DFTNNLCLGF GMTSREGDNL LCSIPNPPLG MCPPPPSAFL GPKCALWDCP RPAQGSEWCR 240 DYCSDLHATM ALNEGPPGMT PVLRPGGIDL KDGPLFSALC ARTQGKAVGI PECEGAATTK 300 SPWNAPELFD LSVLEGESIR EWLFFDKPRR AFESGNRKQR SLPDYCGRGW HESRKQVMKD 360 FGGLKRSYYM DPQPLTQFEW HLYEYEINNC DTYALYRLEL KQVDGKKNAK GKNMGDSLVD 420 LQQQMGRLTS EYPADSKRNV KGRAKLVQKV KAKNGYSTPN QTNPNDNFDY GTGPQYGYFV 480 DDLNDYYGI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011626288.1 | 0.0 | transcription factor VOZ1 | ||||
Refseq | XP_011626289.1 | 0.0 | transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | W1Q0P1 | 0.0 | W1Q0P1_AMBTC; Uncharacterized protein | ||||
STRING | ERN14021 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2327 | 13 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-180 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00021.160 |
Entrez Gene | 18442269 |
Publications ? help Back to Top | |||
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