PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00021.149
Common NameAMTR_s00021p00189010
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WOX
Protein Properties Length: 347aa    MW: 38466.4 Da    PI: 8.8856
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00021.149genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.8e-1845105257
                                               T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                                  Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                               ++R+++++eq+++Le+ F++   +p +ee++++ ++l    ++ +++V++WFqNr+ + k+
  evm_27.model.AmTr_v1.0_scaffold00021.149  45 KPRWNPKPEQIRILEAIFNSgMVNPPREEIRRIRAQLqeygQVGDANVFYWFQNRKSRSKH 105
                                               89*****************99*************************************995 PP
2Wus_type_Homeobox112.62.1e-3644107265
                         Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                                               +++RW+P+peQi+iLe++++sG+++P++eei+ri+a+L+eyG+++d+NVfyWFQNrk+R+++k+
  evm_27.model.AmTr_v1.0_scaffold00021.149  44 PKPRWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKH 107
                                               689**********************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.68941106IPR001356Homeobox domain
SuperFamilySSF466895.56E-1341111IPR009057Homeodomain-like
SMARTSM003892.6E-943110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-744111IPR009057Homeodomain-like
CDDcd000862.03E-844107No hitNo description
PfamPF000467.6E-1645105IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPCNQW QHDINSPLIC QKPPFTAEER SPEPKPRWNP KPEQIRILEA  60
IFNSGMVNPP REEIRRIRAQ LQEYGQVGDA NVFYWFQNRK SRSKHKHKQL HQSSAKPATP  120
SPPTVPNQNY QPTPQSSQTP NSSSSSSEKS EASPVQLGSI KPGATVNVME GLNAANSPTC  180
SVNQVAYLGS QPEPSPLFFQ TESGCEMSAF SELANMLQQQ EKMKMGHIAM NDILNGVGEG  240
TANSNGCSGG GGRVTVFINE MAFEVGAGGR VNVREAFGEA MLIHSSGHPV PTNEWGFTLQ  300
PLQHGHFYYL VPYLPYYQTL TLILPIVSLH HVSYHGEKKK KAIFFY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM8821472e-66FM882147.1 Amborella trichopoda partial wox9 gene for putative wuschel homeobox protein WOX9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006852543.20.0WUSCHEL-related homeobox 9 isoform X1
TrEMBLW1Q1100.0W1Q110_AMBTC; Uncharacterized protein
STRINGERN140100.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP61031220
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.14e-61homeobox-3
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]