PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00021.148 | ||||||||
Common Name | AMTR_s00021p00187850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | LBD | ||||||||
Protein Properties | Length: 189aa MW: 20855.5 Da PI: 7.4622 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 112.2 | 3.5e-35 | 10 | 108 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAear 68 aCaaCk++rrkC+++C lap fpae+ kf++vhk+FG+snv+kl+k+l++ee +++a++s+++eAe+r evm_27.model.AmTr_v1.0_scaffold00021.148 10 ACAACKHQRRKCTPECLLAPFFPAEHGDKFKAVHKVFGVSNVVKLIKSLDNEEkQTRAIESICWEAEWR 78 7************************************************76664899************ PP DUF260 69 ardPvyGavgvilklqqqleqlkaelallk 98 + +Pv+G+ + +++l+++l++l+ ela+++ evm_27.model.AmTr_v1.0_scaffold00021.148 79 QLEPVEGCWAEFKRLNEELHRLRRELAEIH 108 **************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.093 | 9 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.9E-35 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MLKGSSGHQA CAACKHQRRK CTPECLLAPF FPAEHGDKFK AVHKVFGVSN VVKLIKSLDN 60 EEKQTRAIES ICWEAEWRQL EPVEGCWAEF KRLNEELHRL RRELAEIHMC AKVYCAKNAL 120 PHGSCNNNNN NNNHNNSGNG HSCESCMGPT IGGAGTYGLI GLEGGSEGGD HVTPCPPAPP 180 SLNQHYYFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-25 | 11 | 108 | 12 | 108 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-25 | 11 | 108 | 12 | 108 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006852542.2 | 1e-140 | LOB domain-containing protein 2 | ||||
TrEMBL | W1Q0F6 | 1e-138 | W1Q0F6_AMBTC; Uncharacterized protein (Fragment) | ||||
STRING | ERN14009 | 1e-139 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 1e-30 | LOB domain-containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00021.148 |
Publications ? help Back to Top | |||
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