PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

ERF

Protein Properties

Length: 214aa MW: 23682.3 Da PI: 9.0806

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00021.144	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.7	1.9e-20	87	138	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd s + +r++lg+f+taeeAa a+++a+ k++g+ evm_27.model.AmTr_v1.0_scaffold00021.144 87 HYRGVRRRP-WGKFAAEIRDSSR---QgARVWLGTFDTAEEAAMAYDKAAFKMRGP 138 7******.******422...24************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	4.1E-32	86	145	IPR001471	AP2/ERF domain
Pfam	PF00847	1.1E-15	87	137	IPR001471	AP2/ERF domain
SMART	SM00380	1.1E-37	87	151	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.144	87	145	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.81E-24	87	146	IPR016177	DNA-binding domain
CDD	cd00018	2.69E-29	87	146	No hit	No description
PRINTS	PR00367	1.7E-11	88	99	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-11	111	127	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MVPLNKASRD PHMRVSELPL NENDSLDMIL FDVLNEAIGK GWSPKKEEEE EVQQQQQQHQ 60 QSRHHEVSVG EHTPTAHQTG QQLNKRHYRG VRRRPWGKFA AEIRDSSRQG ARVWLGTFDT 120 AEEAAMAYDK AAFKMRGPKA LLNFPAYVVA TALVGSRGKP APIERKISSQ QRQRLGRDCS 180 VSSASSSSSF EGEGEGEGEG EGRFWGGASR LGV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	4e-30	86	148	4	66	ATERF1
3gcc_A	4e-30	86	148	4	66	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of gene expression during fruit ripening, by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strong induction by ethylene and by wounding. {ECO:0000269\|PubMed:12935902}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006852538.3	1e-157	ethylene-responsive transcription factor 1
Swissprot	Q84XB3	3e-41	ERF1_SOLLC; Ethylene-responsive transcription factor 1
TrEMBL	W1Q109	1e-156	W1Q109_AMBTC; Uncharacterized protein
STRING	ERN14005	1e-157	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17500.1	7e-28	ethylene responsive element binding factor 1

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00021.144

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]